Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31952 | Canola | plasma membrane | 92.75 | 97.08 |
| AT2G20580.1 | Thale cress | cytosol | 94.31 | 94.84 |
| CDY29907 | Canola | extracellular | 90.74 | 91.25 |
| CDX92875 | Canola | extracellular | 90.4 | 90.91 |
| CDY38389 | Canola | cytosol, extracellular | 89.96 | 90.36 |
| CDY35187 | Canola | cytosol, extracellular | 89.73 | 90.13 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 83.71 | 84.27 |
| Solyc07g053650.2.1 | Tomato | nucleus | 76.12 | 82.97 |
| PGSC0003DMT400024306 | Potato | cytosol | 81.36 | 81.36 |
| CDY14239 | Canola | cytosol, extracellular | 80.25 | 80.97 |
| CDX97442 | Canola | cytosol | 79.24 | 80.41 |
| CDY72396 | Canola | cytosol | 12.17 | 75.69 |
| GSMUA_Achr11P... | Banana | cytosol | 73.55 | 74.21 |
| TraesCS6A01G116500.1 | Wheat | golgi, unclear | 74.0 | 74.08 |
| TraesCS6D01G105500.1 | Wheat | golgi | 74.0 | 74.08 |
| HORVU6Hr1G021020.1 | Barley | cytosol | 73.77 | 73.61 |
| TraesCS6B01G144500.1 | Wheat | cytosol | 73.88 | 73.23 |
| Os02t0146700-02 | Rice | plasma membrane | 73.33 | 73.16 |
| Zm00001d053881_P001 | Maize | mitochondrion, plastid | 72.32 | 72.65 |
| EES04513 | Sorghum | cytosol | 72.32 | 72.48 |
| Zm00001d015259_P001 | Maize | cytosol | 71.76 | 72.25 |
| Os09t0326800-01 | Rice | plasma membrane | 70.98 | 71.38 |
| Os06t0699900-01 | Rice | plasma membrane | 71.54 | 71.14 |
| Solyc10g008180.1.1 | Tomato | plastid | 56.25 | 68.95 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.76 | 63.7 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 58.71 | 59.77 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 54.35 | 59.61 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 57.37 | 59.28 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 54.8 | 59.09 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 57.7 | 58.75 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 37.72 | 54.52 |
| CDX99107 | Canola | cytosol | 14.17 | 49.03 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 30.25 | 46.25 |
| CDY33144 | Canola | extracellular | 14.4 | 41.21 |
| CDY65736 | Canola | extracellular | 15.51 | 34.24 |
| CDY33145 | Canola | extracellular | 0.56 | 21.74 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.01 | 18.62 |
| CDY12178 | Canola | cytosol | 16.74 | 15.12 |
| CDY60623 | Canola | endoplasmic reticulum, golgi | 16.29 | 15.07 |
| CDY19162 | Canola | extracellular | 16.52 | 14.74 |
| CDX84724 | Canola | cytosol, plastid | 16.52 | 14.73 |
| CDX79472 | Canola | cytosol, plastid | 16.41 | 14.71 |
| CDY23791 | Canola | cytosol, plastid | 16.52 | 14.68 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | InterPro:ARM-like | InterPro:ARM-type_fold | EnsemblPlants:CDY05774 |
| ProteinID:CDY05774 | ProteinID:CDY05774.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0019538 |
| GO:GO:0030234 | GO:GO:0042176 | EnsemblPlantsGene:GSBRNA2T00120846001 | InterPro:IPR011989 | PFAM:PF01851 | PIRSF:PIRSF015965 |
| PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 | UniParc:UPI0004EDB355 | SEG:seg |
Description
BnaC07g00290D
Coordinates
chrLK031964:+:809675..815521
Molecular Weight (calculated)
98392.6 Da
IEP (calculated)
4.786
GRAVY (calculated)
-0.088
Length
896 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSNLAPTPD TNSVGGGGAR KDEASVKVPS KDPKKKDDKK KDDLSEEDLE LKQNLELYVE RLQDPNPDLQ RAALESMRQE IRASTSSMTS VPKPLKFLRP
101: HYGTLKAFHQ TMPASDLKKC LSDILSVLAL TMSAEGQRES LSYRLIGTEG DIGSWGHEYV RNLAGEIAQE YTKRQSEEAP IDDLMELVQQ IVAFHMKHNA
201: ETEAVDLLMD VEDLDLLLEH VDKTNFKRTC NYLTTAAKYL PGPDDMLVLD ISYMIYMKFE EYPNALQIAV FLDNTQYVKQ VFTSCADLLR KKQFCYMIAR
301: HGITFELDDE MVADEDDREA LQDIVNNTKL SEGYLTLARD IEVMEAKTPE DIYKAHLLDG RASSGASVDS ARQNLAATFV NAFVNAGFGQ DKLMTVPSDS
401: TTGSSGNWLF KNKEHGKISA AASLGMIQLW DVEAGLAQLD KYFHSNDNPI LSGALLGVGI VNSGIKSDCD PALALLGDYV DKEDSSVRIG AIMGLGIAYA
501: GSQNDQIRSK LSPILNDAKA PLDVIAFASL SLGMIYVGSC NEEVAQSIIF ALMDRSEAEL GDALTRFLPL GLGLLYLGKQ ESVEATAEVS KTFNEKIRKY
601: CDMTLLSCAY AGTGNVLKVQ DLLAQCGEHL EKGDIHQGPA VLGLAMVAMS EELGIDMEIR SLERMLQYGE QNIRRAVPLA LGLLCISNPK VTVMDTLSRL
701: SHDTDSEVAM AAIISLGLIG AGTNNARLAG MLRNLSSYYY KDASLLFCVR IAQGLVHMGK GLLTLTPFHS ERFLLSPTAL AGIVTLLHAC LDMKPIILGK
801: YHYVLYFLVL AMQPRMMLTV DKDLKPLSVP VRVGQAVDVV GQAGRPKTIT GFQTHSTPVL LAAGERAELA TDKYIPLSPI LEGFIILEEN PDYREE
101: HYGTLKAFHQ TMPASDLKKC LSDILSVLAL TMSAEGQRES LSYRLIGTEG DIGSWGHEYV RNLAGEIAQE YTKRQSEEAP IDDLMELVQQ IVAFHMKHNA
201: ETEAVDLLMD VEDLDLLLEH VDKTNFKRTC NYLTTAAKYL PGPDDMLVLD ISYMIYMKFE EYPNALQIAV FLDNTQYVKQ VFTSCADLLR KKQFCYMIAR
301: HGITFELDDE MVADEDDREA LQDIVNNTKL SEGYLTLARD IEVMEAKTPE DIYKAHLLDG RASSGASVDS ARQNLAATFV NAFVNAGFGQ DKLMTVPSDS
401: TTGSSGNWLF KNKEHGKISA AASLGMIQLW DVEAGLAQLD KYFHSNDNPI LSGALLGVGI VNSGIKSDCD PALALLGDYV DKEDSSVRIG AIMGLGIAYA
501: GSQNDQIRSK LSPILNDAKA PLDVIAFASL SLGMIYVGSC NEEVAQSIIF ALMDRSEAEL GDALTRFLPL GLGLLYLGKQ ESVEATAEVS KTFNEKIRKY
601: CDMTLLSCAY AGTGNVLKVQ DLLAQCGEHL EKGDIHQGPA VLGLAMVAMS EELGIDMEIR SLERMLQYGE QNIRRAVPLA LGLLCISNPK VTVMDTLSRL
701: SHDTDSEVAM AAIISLGLIG AGTNNARLAG MLRNLSSYYY KDASLLFCVR IAQGLVHMGK GLLTLTPFHS ERFLLSPTAL AGIVTLLHAC LDMKPIILGK
801: YHYVLYFLVL AMQPRMMLTV DKDLKPLSVP VRVGQAVDVV GQAGRPKTIT GFQTHSTPVL LAAGERAELA TDKYIPLSPI LEGFIILEEN PDYREE
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.