CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60623	Canola	endoplasmic reticulum, golgi	92.74	94.94
CDX79472	Canola	cytosol, plastid	94.35	93.69
CDY19162	Canola	extracellular	94.66	93.53
CDX84724	Canola	cytosol, plastid	94.56	93.33
CDY23791	Canola	cytosol, plastid	94.76	93.25
AT2G32730.1	Thale cress	cytosol	93.95	92.83
KRH41754	Soybean	nucleus	83.57	82.41
KRH60454	Soybean	endoplasmic reticulum	83.27	82.11
PGSC0003DMT400040763	Potato	cytosol	79.64	79.56
PGSC0003DMT400076219	Potato	endoplasmic reticulum	80.24	79.28
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	79.23	79.15
Solyc09g091750.2.1	Tomato	plastid	80.04	79.08
GSMUA_Achr1P10550_001	Banana	cytosol	79.64	78.14
KXG27072	Sorghum	plasma membrane	77.22	75.99
Zm00001d026265_P002	Maize	plasma membrane	77.12	74.85
Os08t0224700-01	Rice	plasma membrane	73.79	74.16
Os04t0608500-01	Rice	plasma membrane	22.98	74.03
Zm00001d049357_P001	Maize	plasma membrane	73.69	73.99
EES13543	Sorghum	endoplasmic reticulum	73.59	73.89
Zm00001d024342_P001	Maize	plasma membrane	73.39	73.46
Zm00001d002373_P006	Maize	cytosol, plasma membrane	74.19	73.02
VIT_00s0125g00350.t01	Wine grape	cytosol	13.51	72.43
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	68.45	72.16
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	69.46	72.07
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	74.4	71.58
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	74.29	71.55
TraesCS2A01G430100.2	Wheat	golgi	75.0	71.54
TraesCS1B01G363000.1	Wheat	cytosol	71.27	70.56
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	71.07	70.36
CDY33145	Canola	extracellular	0.4	17.39
CDY05774	Canola	cytosol	15.12	16.74
CDY38389	Canola	cytosol, extracellular	14.92	16.59
CDY35187	Canola	cytosol, extracellular	14.82	16.48
CDX92875	Canola	extracellular	14.72	16.39
CDY29907	Canola	extracellular	14.72	16.39
CDY31952	Canola	plasma membrane	14.11	16.36
CDY14239	Canola	cytosol, extracellular	14.52	16.22
CDX97442	Canola	cytosol	13.51	15.18
CDY33144	Canola	extracellular	3.02	9.58
CDY65736	Canola	extracellular	3.83	9.36
CDX99107	Canola	cytosol	2.42	9.27
CDY72396	Canola	cytosol	0.71	4.86

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.2	InterPro:26S_Psome_Rpn2	GO:A0A078FJ76	UniProt:A0A078FJ76	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY12178	ProteinID:CDY12178	ProteinID:CDY12178.1	ncoils:Coil	GO:GO:0000502
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00061185001	InterPro:IPR011989	PFAM:PF01851
PFAM:PF13646	PIRSF:PIRSF015947	PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	InterPro:Proteasome/cyclosome_rpt	SUPFAM:SSF48371
TMHMM:TMhelix	UniParc:UPI0004EE3F30	SEG:seg	:	:	:

Description

BnaC04g12080DBnaC04g12080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ76]

Coordinates

chrLK032018:-:179592..184695

Molecular Weight (calculated)

107777.0 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.031

Length

992 amino acids

Sequence
(BLAST)

001: MAAAMVSSAG GLLAMLNEPQ PTLKHHALSH LNNLVDRFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GALFDVSEDT
101: DYVHTLLAKA IDEYAILRSK AVESSEMVDI DPRLEAIVER MLGKCITDGK YQQSMGIAIE CRRLDKLEEA ITKSDNVEGT LTYCINVSHS FVNRREYRHE
201: VLSLLVEVYQ KLPSPDYLSI CQCLMFLDEP QGVATILEKL LRSDSKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RPVEVAQAVE TTATTNENLS
301: GDVLMADDTP VTPAQTVVHE TDPVDATYAE RLTKIKGILS GETSIQLTLQ FLYIHNKSDL LILKTIKQSV EMRNSVCHSA TIYANAIMHA GTTVDTFLRE
401: NLDWLSRATN WAKFSATAGL GVIHRGHLQQ GRSLMAPYLP QGGAGGGGSP YSEGGALYAL GLIHANHGEG IKQFLRDSLR NTNVEVIQHG ACLGLGLSAL
501: GTADEEIYDD VKSVLYTDSA VAGEAAGISM GLLLVGTATE KASEMLAYAH ETQHEKIIRG LALGIALTVY GREEGADTLI EQMTRDQDPI IRYGGMYALA
601: LAYCGTANNK AIRQLLHFAV SDVSDDVRRT AVLALGFVLY SDPEQTPRIV SLLSESYNPH VRYGAALAVG ISCAGTGLSE AISLLEPLTS DVVDFVRQGA
701: LIAMAMVMVQ ISEASDSRVG AFRRQLEKII LDKHEDTMSK MGAILASGIL DAGGRNVTIR LLSKTKHDKV TAVIGLAVFS QFWYWYPLVY FISLAFSPTA
801: FIGLNYDLKV PKFEFMSHAK PSLFEYPKPT TVPTSNTAAK LPTAVLSTSV KAKARAKKEA EQKANAEKAS EAADKEGDSM QVDGTATVEK KAAEPEAAFE
901: ILVNPTRVVP AQEKYIKLLE DSRYVPVKLA PSGFVLLKDL REHEPEVLSL TDAPTSAASP ATGAAAATQG TTASAMAVDD EPQPPQAFEY AS

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.