Factsheet for VIT_00s0125g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	74.59	13.73
CDY60623	Canola	endoplasmic reticulum, golgi	71.89	13.73
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	69.19	13.6
PGSC0003DMT400040763	Potato	cytosol	72.97	13.6
EES13543	Sorghum	endoplasmic reticulum	72.43	13.56
Zm00001d024342_P001	Maize	plasma membrane	72.43	13.52
CDY12178	Canola	cytosol	72.43	13.51
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	72.43	13.49
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	69.73	13.49
KRH60454	Soybean	endoplasmic reticulum	72.97	13.42
KRH41754	Soybean	nucleus	72.97	13.42
CDX79472	Canola	cytosol, plastid	72.43	13.41
Bra005560.1-P	Field mustard	plastid	72.97	13.39
Zm00001d049357_P001	Maize	plasma membrane	71.35	13.36
CDY19162	Canola	extracellular	72.43	13.35
CDX84724	Canola	cytosol, plastid	72.43	13.33
CDY23791	Canola	cytosol, plastid	72.43	13.29
Os08t0224700-01	Rice	plasma membrane	70.81	13.27
PGSC0003DMT400076219	Potato	endoplasmic reticulum	71.89	13.25
AT2G32730.1	Thale cress	cytosol	71.89	13.25
Bra021810.1-P	Field mustard	cytosol, plastid	71.89	13.25
Bra022899.1-P	Field mustard	cytosol, plastid	71.89	13.25
AT1G04810.1	Thale cress	cytosol	71.35	13.19
GSMUA_Achr1P10550_001	Banana	cytosol	71.89	13.16
Solyc09g091750.2.1	Tomato	plastid	71.35	13.15
KXG27072	Sorghum	plasma membrane	70.81	13.0
TraesCS1B01G363000.1	Wheat	cytosol	70.27	12.97
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	69.73	12.87
Zm00001d026265_P002	Maize	plasma membrane	70.81	12.82
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	71.35	12.82
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	71.35	12.8
TraesCS2A01G430100.2	Wheat	golgi	71.35	12.69
VIT_00s0125g00380.t01	Wine grape	cytosol	2.7	11.9
Zm00001d002373_P006	Maize	cytosol, plasma membrane	61.08	11.21
VIT_00s0215g00040.t01	Wine grape	extracellular	27.57	7.97
VIT_00s0215g00050.t01	Wine grape	cytosol	10.27	6.33
VIT_12s0028g03130.t01	Wine grape	cytosol	18.38	3.82
VIT_03s0038g02720.t01	Wine grape	cytosol	2.16	3.01
Os04t0608500-01	Rice	plasma membrane	3.78	2.27
VIT_00s0125g00320.t01	Wine grape	mitochondrion, plasma membrane	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0125g00350	EMBL:FN595230	EnsemblPlants:VIT_00s0125g00350.t01	EnsemblPlantsGene:VIT_00s0125g00350	Gene3D:1.25.10.10	GO:GO:0003674
GO:GO:0005488	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR10943	PANTHER:PTHR10943:SF10
PFAM:PF13646	ProteinID:CCB46508	ProteinID:CCB46508.1	SUPFAM:SSF48371	UniParc:UPI00021089D3	UniProt:F6H2R6
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:2026409..2027844

Molecular Weight (calculated)

20554.8 Da

IEP (calculated)

5.873

GRAVY (calculated)

-0.031

Length

185 amino acids

Sequence
(BLAST)

001: MPTTERDSSN SFVIACHDAG LGLAHEKHHG KIIRGNALRI AFTVYGRQEE ADILIEQMTR DQDPILRYGD VSDDVRRIVV LAIGFVLYSE PEQTPRIVSL
101: LSESYNPHIR YGAAIAIKIS YVNTVLSEVI PLLEPLTSDG VDFVHQGALI AMAKVMVKIN ASSDSRVGTF KQQLEKIILD KHEDV

Best Arabidopsis Sequence Match ( AT1G04810.1 )
(BLAST)

0001: MAAAMVSSAG GLLAMLNEPH PSLKLHALSY LIRLVDQFWP EISTSVPIIE SLYEDEEFDQ HQRQLAALLA SKVFYYLGEL NDSLSYALGA GSLFDVSEDS
0101: DYIHTLLSKA IDEYAILRSK AVESSEVVEI DPRLVAIVER MLDKCITDGK YQQAMGIAIE CRRLDKLEEA IIKSENVQGT LSYCINVSHS FVNQREYRHE
0201: VLRLLVNVYQ KLASPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LAFQISFDLV QNEHQAFLMS VRDRLPAPKT RPVEAIQAVE TSTAQNENTA
0301: GDVQMADETP SQTIVHETDP VDAVYAERLT KAKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTS VEVIQHGACL GLGLAALGTA
0501: DEDIYDDIKS VLYTDSAVAG EAAGISMGLL LVGTATDKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGAFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLTVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVA TANTAAKLPT AVLSTSAKAK AKAKKEAEQK AKAENSGNEA GKANAASDEK EAESMQVDST ATTVEKKVEP
0901: EATFEILVNP ARVVPSQEKY IKLMEDSRYV PMKLAPSGFV LLRDLRPHEP EVLSLTDAPT STASPAVGAE AAGQAQQAAT TSAMAIDDEP QPPQAFEYAS
1001: P

Arabidopsis Description

RPN2B26S proteasome non-ATPase regulatory subunit 1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.