Factsheet for Os04t0608500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0215g00040.t01	Wine grape	extracellular	76.62	36.88
KXG27072	Sorghum	plasma membrane	92.21	28.17
Zm00001d026265_P002	Maize	plasma membrane	90.91	27.4
TraesCS2D01G427700.2	Wheat	endoplasmic reticulum, plasma membrane	91.23	27.26
TraesCS2A01G430100.2	Wheat	golgi	90.91	26.92
TraesCS2B01G450800.2	Wheat	cytosol, endoplasmic reticulum	87.34	26.12
Zm00001d002373_P006	Maize	cytosol, plasma membrane	85.39	26.09
Os08t0224700-01	Rice	plasma membrane	80.84	25.23
TraesCS1A01G348400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	76.95	25.19
HORVU1Hr1G081810.8	Barley	cytosol, plasma membrane	76.62	24.69
GSMUA_Achr1P10550_001	Banana	cytosol	78.57	23.94
VIT_10s0042g00800.t01	Wine grape	cytosol, plastid	77.92	23.88
TraesCS1D01G351400.1	Wheat	cytosol, endoplasmic reticulum	77.27	23.75
TraesCS1B01G363000.1	Wheat	cytosol	76.95	23.65
CDY60623	Canola	endoplasmic reticulum, golgi	74.35	23.63
KRH60454	Soybean	endoplasmic reticulum	75.65	23.16
KRH41754	Soybean	nucleus	75.32	23.06
PGSC0003DMT400040763	Potato	cytosol	74.35	23.06
CDY12178	Canola	cytosol	74.03	22.98
CDX79472	Canola	cytosol, plastid	74.35	22.92
AT2G32730.1	Thale cress	cytosol	74.68	22.91
Bra021810.1-P	Field mustard	cytosol, plastid	74.68	22.91
CDY19162	Canola	extracellular	74.68	22.91
Solyc05g053650.2.1	Tomato	endoplasmic reticulum	73.7	22.86
CDY23791	Canola	cytosol, plastid	74.68	22.82
AT1G04810.1	Thale cress	cytosol	74.03	22.78
Bra022899.1-P	Field mustard	cytosol, plastid	74.03	22.71
CDX84724	Canola	cytosol, plastid	74.03	22.69
Bra005560.1-P	Field mustard	plastid	74.03	22.62
Solyc09g091750.2.1	Tomato	plastid	73.05	22.41
PGSC0003DMT400076219	Potato	endoplasmic reticulum	72.4	22.21
Os09t0326800-01	Rice	plasma membrane	15.91	5.5
Os06t0699900-01	Rice	plasma membrane	15.91	5.44
Os02t0146700-02	Rice	plasma membrane	15.58	5.35
VIT_00s0125g00350.t01	Wine grape	cytosol	2.27	3.78
VIT_00s0215g00050.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os04t0608500-01	EnsemblPlantsGene:Os04g0608500	Gene3D:1.25.10.10	InterPro:ARM-like	InterPro:IPR011989	InterPro:Proteasome/cyclosome_rpt
PANTHER:PTHR10943	PANTHER:PTHR10943:SF10	PFAM:PF01851	ProteinID:BAS90922.1	SEG:seg	UniParc:UPI0003939557
UniProt:A0A0P0WEK5	MapMan:35.1	:	:	:	:

Description

19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2BSimilar to 26S proteasome subunit RPN2a. (Os04t0608500-01)

Coordinates

chr4:-:30798891..30802515

Molecular Weight (calculated)

32965.1 Da

IEP (calculated)

5.763

GRAVY (calculated)

-0.131

Length

308 amino acids

Sequence
(BLAST)

001: VLRCLVKIYQ TLPHPDYLSI CQCLMFLGEP ETVANILDKL LSGSKDDALL AYQIAFDLVE NENQAFLLNV RNRLASQTPE SNPDSGSALP DDQAANAGTG
101: STEPAGDVQM RDDTATPNGS SHTVDPNEVA RADRLAKIKG ILSGETSIQL TLQFLYSHNR SDLLILKTIK QAVEMRNSVC HSATICTNAI MHAGTTVDTF
201: LRENLEWLSR ATNWAKFSAT AGLGVIHRGH LQQGRALMAP YLPQSGAVGG GSPYSEGGAL YALGLIHANH GEGIKQFLRE SLRNTSAEVI QHGACLGLGL
301: AALGTADE

Best Arabidopsis Sequence Match ( AT2G32730.1 )
(BLAST)

0001: MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS
0101: DYVHTLLAKA IDEYASLRSK AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT LSYCINVSHS FVNRREYRHE
0201: VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS
0301: GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN VEVIQHGACL GLGLSALGTA
0501: DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGVFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV
0901: EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF
1001: EYAS

Arabidopsis Description

RPN2A26S proteasome non-ATPase regulatory subunit 1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O48844]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.