CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72742
CDX90286
CDY05774
CDY12093
CDY22415
CDY31952

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	CDY05774	AT2G20580.1	21798944
AT3G02540.1	CDY31952	AT2G20580.1	21798944
AT3G02540.1	CDX72742	AT4G38630.1	20059542
AT3G02540.1	CDX90286	AT4G38630.1	20059542
AT3G02540.1	CDY12093	AT4G38630.1	20059542
AT3G02540.1	CDY22415	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001050.1-P	Field mustard	cytosol	88.28	88.28
CDX91998	Canola	cytosol	85.79	85.36
AT3G02540.1	Thale cress	cytosol	79.8	76.37
CDY01661	Canola	cytosol	68.08	72.22
CDX74522	Canola	cytosol	67.58	71.32
VIT_14s0006g03040.t01	Wine grape	cytosol	67.08	70.6
GSMUA_Achr9P15580_001	Banana	cytosol	38.9	70.59
CDY58121	Canola	cytosol	67.58	70.57
CDX67404	Canola	cytosol	65.34	68.59
GSMUA_Achr5P05860_001	Banana	cytosol	64.34	65.82
GSMUA_Achr3P07380_001	Banana	cytosol	64.84	63.57
Os02t0465000-00	Rice	cytosol	14.21	61.96
TraesCS7D01G209100.1	Wheat	cytosol	58.85	57.99
TraesCS7B01G113500.1	Wheat	cytosol	58.6	57.74
Os06t0264300-01	Rice	cytosol, nucleus, plastid	59.1	57.38
Os09t0407200-01	Rice	cytosol	55.86	57.14
TraesCS5B01G204000.1	Wheat	cytosol	55.61	56.46
TraesCS5A01G204200.1	Wheat	cytosol	55.36	56.2
TraesCS7A01G206300.1	Wheat	cytosol	57.11	56.13
KXG19738	Sorghum	cytosol	57.11	56.13
Zm00001d037326_P001	Maize	cytosol	56.11	55.97
TraesCS5D01G211900.1	Wheat	cytosol	55.11	55.95
GSMUA_Achr9P15590_001	Banana	cytosol	19.7	55.63
KXG35597	Sorghum	cytosol	54.36	54.77
Os08t0430200-01	Rice	cytosol	55.36	54.68
Zm00001d045665_P003	Maize	cytosol	55.61	54.39
HORVU5Hr1G060920.1	Barley	mitochondrion	55.86	51.73
CDY52848	Canola	cytosol	45.39	50.7
CDX81753	Canola	cytosol, nucleus, plastid	44.89	49.59
HORVU7Hr1G042100.8	Barley	cytosol	51.12	48.81
Zm00001d005732_P001	Maize	cytosol	53.62	48.31
CDY33351	Canola	cytosol, nucleus, plastid	41.65	46.39
CDY35071	Canola	cytosol	42.39	46.07
CDX79333	Canola	cytosol	44.39	45.88
CDX67983	Canola	plastid	44.39	41.59
Zm00001d020419_P003	Maize	cytosol	45.89	40.26
CDY26493	Canola	cytosol	35.16	39.72
CDX69474	Canola	cytosol	35.66	39.18
CDY26494	Canola	nucleus	24.94	37.17
CDY26496	Canola	cytosol	32.67	36.49
CDX69472	Canola	cytosol	31.67	35.77
CDY26495	Canola	cytosol	13.22	27.89
CDX69473	Canola	cytosol	34.41	20.94

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:A0A078CAZ3	EnsemblPlants:CDX74251
ProteinID:CDX74251	ProteinID:CDX74251.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00112034001	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EED227	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

BnaA03g27960D

Coordinates

chrLK031800:+:1949216..1952160

Molecular Weight (calculated)

42235.9 Da

IEP (calculated)

4.378

GRAVY (calculated)

-0.237

Length

401 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVADVKKNI ETVQGADVYP AAKLMLIHQG KVLKDETTIE ENKVAENSFI VIMMAKSKPS SSGASSAGST VQAKSMPTSS
101: AQPPASVAIP AAAAPAPAPV AATETVAAPV PVPESVSTTP PASTPAPEST PAGSQDDVYG QAASNLAAGS NLESTILQIL DMGGGAWDRD TVVRALRAAF
201: NNPERAVEYL YSGIPEQAEV PPVARAPASG GQPANPAAQA QQPAAAPATG PNANPLDLFP QGLPNVGANP GGGTLDFLRN SQQFQALRAM VQANPQVLQP
301: MLQELGKQNP NLMRLIQEHQ ADFLRLINEP VEGGAEGANL FGEGMPQPQA IQVTPEERDA IERLEAMGFE RALVLEVFFA CNKNEELAAN YLLDHMHEFE
401: E

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.