Factsheet for TraesCS5D01G211900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G071300.2
TraesCS4B01G227200.2
TraesCS4D01G227900.2
TraesCS6A01G116500.1
TraesCS6B01G144500.1
TraesCS6D01G105500.1
TraesCS7A01G421600.1
TraesCS7A01G421700.1
TraesCS7B01G321900.1
TraesCS7B01G322000.1
TraesCS7D01G413800.1
TraesCS7D01G413900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	TraesCS6A01G116500.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS6B01G144500.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS6D01G105500.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7A01G421600.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7A01G421700.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7B01G321900.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7B01G322000.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7D01G413800.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS7D01G413900.1	AT2G20580.1	21798944
AT3G02540.1	TraesCS4A01G071300.2	AT4G38630.1	20059542
AT3G02540.1	TraesCS4B01G227200.2	AT4G38630.1	20059542
AT3G02540.1	TraesCS4D01G227900.2	AT4G38630.1	20059542
AT5G38470.1	TraesCS4A01G071300.2	AT4G38630.1	20059542
AT5G38470.1	TraesCS4B01G227200.2	AT4G38630.1	20059542
AT5G38470.1	TraesCS4D01G227900.2	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G204000.1	Wheat	cytosol	98.48	98.48
TraesCS5A01G204200.1	Wheat	cytosol	87.59	87.59
HORVU5Hr1G060920.1	Barley	mitochondrion	89.37	81.52
Os09t0407200-01	Rice	cytosol	74.18	74.74
KXG35597	Sorghum	cytosol	68.61	68.09
GSMUA_Achr9P15580_001	Banana	cytosol	36.2	64.71
GSMUA_Achr5P05860_001	Banana	cytosol	61.77	62.24
Solyc02g085840.2.1	Tomato	cytosol	59.49	60.41
Bra028184.1-P	Field mustard	cytosol	57.72	60.32
CDY01661	Canola	cytosol	57.47	60.05
KRH75377	Soybean	cytosol, nucleus	59.49	59.95
PGSC0003DMT400032941	Potato	cytosol	58.99	59.74
Solyc02g063130.2.1	Tomato	cytosol, extracellular	57.72	59.53
Bra028408.1-P	Field mustard	cytosol	57.47	59.42
CDY58121	Canola	cytosol	57.72	59.38
CDX74522	Canola	cytosol	56.71	58.95
GSMUA_Achr3P07380_001	Banana	cytosol	61.01	58.92
AT5G38470.1	Thale cress	cytosol	56.2	58.73
CDX67404	Canola	cytosol	56.71	58.64
PGSC0003DMT400062159	Potato	cytosol	57.22	58.55
VIT_14s0006g03040.t01	Wine grape	cytosol	55.95	58.01
Zm00001d005732_P001	Maize	cytosol	64.56	57.3
VIT_01s0011g03410.t01	Wine grape	cytosol	56.96	56.68
KRH45279	Soybean	cytosol	57.22	56.36
KRG90804	Soybean	cytosol	56.96	55.97
TraesCS7D01G209100.1	Wheat	cytosol	57.47	55.77
KRH35965	Soybean	cytosol	57.47	55.64
Solyc04g007120.2.1	Tomato	cytosol, plastid	57.22	55.26
CDX74251	Canola	cytosol	55.95	55.11
Bra001050.1-P	Field mustard	cytosol	54.94	54.11
AT3G02540.1	Thale cress	cytosol	56.96	53.7
KRH01763	Soybean	cytosol	50.89	53.6
CDX91998	Canola	cytosol	54.68	53.6
AT5G16090.1	Thale cress	cytosol	21.01	48.54
Zm00001d020419_P003	Maize	cytosol	55.19	47.7
TraesCS6D01G138800.2	Wheat	cytosol	41.27	44.41
CDY26493	Canola	cytosol	33.16	36.9
CDY26494	Canola	nucleus	24.56	36.06
CDX69474	Canola	cytosol	32.91	35.62
Bra008649.1-P	Field mustard	cytosol	30.63	35.17
CDX69472	Canola	cytosol	28.35	31.55
Bra008647.1-P	Field mustard	cytosol	28.35	31.55
CDY26496	Canola	cytosol	28.61	31.48
CDY26495	Canola	cytosol	11.39	23.68
Bra008648.1-P	Field mustard	cytosol	29.62	18.66
CDX69473	Canola	cytosol	30.38	18.21

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280
PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	InterPro:Rad23
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	EnsemblPlantsGene:TraesCS5D01G211900	EnsemblPlants:TraesCS5D01G211900.1	InterPro:UBA	InterPro:UBA-like_sf
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	TIGR:cd01805	SEG:seg

Description

No Description!

Coordinates

chr5D:+:320880984..320886695

Molecular Weight (calculated)

41801.1 Da

IEP (calculated)

4.058

GRAVY (calculated)

-0.269

Length

395 amino acids

Sequence
(BLAST)

001: MKVSVKTLKG SKFEIEVNPA DKVSDVKKLI ESSQGQNVYP ADQQMLIYQG TVLKDETTLE ENKVVENNFL VIMLRQNKGS SSAAPSKSKE PSNQAPPTQT
101: VPATPASQAP ATPAPQAVAA PAPIVPVSAP GPAATASPAP AVAVSTEAET YGQAASNLVA GGTLEATIQS ILEMGGGTWD RDTVLRALRA AFNNPERAVE
201: YLYSGIPEPM EIPAPPPSAQ PADPALASQA AQPAVASSGP NASPLDLFPQ ALPNASANAA GEGNLDVLRN NAQFRSLLSL VQANPQILQP LLQELGKQNP
301: QILQLIQDNQ AEFLRLINEP AEGDEDENLL EQFAEGVPQT IAVTPEENEA ILRLEGMGFD RALVLEVYFA CNKDETLAAN YLLDHMNEFD DGAPQ

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.