CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008648.1-P	Field mustard	cytosol	66.46	69.86
CDY26493	Canola	cytosol	28.53	52.96
CDY26494	Canola	nucleus	20.79	50.93
CDY26496	Canola	cytosol	27.62	50.7
AT5G16090.1	Thale cress	cytosol	13.05	50.29
CDX69474	Canola	cytosol	27.62	49.86
CDX69472	Canola	cytosol	25.49	47.32
Os02t0465000-00	Rice	cytosol	5.31	38.04
GSMUA_Achr9P15590_001	Banana	cytosol	7.74	35.92
CDY01661	Canola	cytosol	20.03	34.92
CDY58121	Canola	cytosol	20.33	34.9
CDX67404	Canola	cytosol	20.03	34.55
CDX74251	Canola	cytosol	20.94	34.41
CDX74522	Canola	cytosol	19.73	34.21
GSMUA_Achr5P05860_001	Banana	cytosol	19.88	33.42
CDX91998	Canola	cytosol	20.33	33.25
TraesCS5A01G204200.1	Wheat	cytosol	18.36	30.63
TraesCS5D01G211900.1	Wheat	cytosol	18.21	30.38
TraesCS5B01G204000.1	Wheat	cytosol	18.21	30.38
Os09t0407200-01	Rice	cytosol	18.06	30.36
GSMUA_Achr3P07380_001	Banana	cytosol	18.66	30.07
KXG35597	Sorghum	cytosol	18.06	29.9
TraesCS7B01G113500.1	Wheat	cytosol	18.21	29.48
CDY52848	Canola	cytosol	15.93	29.25
TraesCS7D01G209100.1	Wheat	cytosol	18.06	29.24
GSMUA_Achr9P15580_001	Banana	cytosol	9.71	28.96
CDY33351	Canola	cytosol, nucleus, plastid	15.78	28.89
Zm00001d037326_P001	Maize	cytosol	17.6	28.86
Os06t0264300-01	Rice	cytosol, nucleus, plastid	18.06	28.81
KXG19738	Sorghum	cytosol	17.75	28.68
TraesCS7A01G206300.1	Wheat	cytosol	17.6	28.43
CDX81753	Canola	cytosol, nucleus, plastid	15.63	28.37
Os08t0430200-01	Rice	cytosol	17.45	28.33
CDY35071	Canola	cytosol	15.78	28.18
Zm00001d045665_P003	Maize	cytosol	17.45	28.05
HORVU5Hr1G060920.1	Barley	mitochondrion	18.21	27.71
CDY26495	Canola	cytosol	7.89	27.37
CDX79333	Canola	cytosol	15.17	25.77
Zm00001d005732_P001	Maize	cytosol	17.0	25.17
HORVU7Hr1G042100.8	Barley	cytosol	15.63	24.52
CDX67983	Canola	plastid	15.17	23.36
Zm00001d020419_P003	Maize	cytosol	15.93	22.98

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:A0A078C362	EnsemblPlants:CDX69473
ProteinID:CDX69473	ProteinID:CDX69473.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00135462001	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI0004EE6F6F	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg

Description

BnaA10g18220D

Coordinates

chrLK031790:+:388558..393984

Molecular Weight (calculated)

74424.6 Da

IEP (calculated)

4.279

GRAVY (calculated)

-0.610

Length

659 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG DRFEIQVNLE DSVADVKKNI ETVMGVTAAE QMLIHKGKVL EDETTMEANE VSEKSIIAVM KRKHASTVTS TSSASLKPQV QAAHPSSTAS
101: NMTYESISES GIQQILEMVS GTWSREAVAY ALYFASNDLD KAVEYLYFGL PEQSEDPHKT EEHTQEPEAS QDAIQEWSLD ALRNTPEFEY VRPLVQSDPS
201: LVEEILEVIE EHNPQLVQFI LDNKADFLRL VLDQPQEHQD DDVLHFQSNE PNNGGESGNQ VGKSEETEVE QPQADQSNKP NNGDGDNQVG GDSEETEVET
301: AKDTEAKTRV EAEIECLEKQ FTRKFVTDGN SSKQNLAGFL ELKSFLSPVK DKMKIFVKTL KGARFEIQVK PEDLVADVKK NIETVLGVTA YPAAEQRLIH
401: KGKVLKDETT VEANNVSEKS TIGVMKYESI SENNIQWILE MSGGEWERDL VEDALYLAYN DIDKAVEYIY FGLPVDSEYP SITEFENVRP RVQSDPSLLE
501: ELLVQIEDLF ITEGETHQEP DERPSAADLE QSLDFARYTQ EYDREYLRAL ARSHPSIVKD FVEMVHEDNP LLFQFIRDNK ADILRLLREG GTGGNQVGES
601: KETEVEVVTP EDYELIERLE ALGFERGDAA VAYFACNRNL QVAANHLLGY KHKHEPRRE

Best Arabidopsis Sequence Match ( AT5G38470.2 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEEWECYGTV GSSNATSCYR YT

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.