Factsheet for Bra024200.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001152.1-P
Bra002279.1-P
Bra002662.1-P
Bra003428.1-P
Bra005560.1-P
Bra006369.1-P
Bra006529.1-P
Bra006530.1-P
Bra006775.1-P
Bra007565.1-P
Bra009693.1-P
Bra010342.1-P
Bra010366.1-P
Bra010849.1-P
Bra011030.1-P
Bra011079.1-P
Bra013157.1-P
Bra013838.1-P
Bra014468.1-P
Bra015170.1-P
Bra015799.1-P
Bra017408.1-P
Bra020079.1-P
Bra020378.1-P
Bra021810.1-P
Bra022899.1-P
Bra023815.1-P
Bra023851.1-P
Bra024165.1-P
Bra024200.1-P
Bra025066.1-P
Bra026492.1-P
Bra027456.1-P
Bra027705.1-P
Bra027934.1-P
Bra029375.1-P
Bra030921.1-P
Bra030922.1-P
Bra031328.1-P
Bra032291.1-P
Bra032422.1-P
Bra035332.1-P
Bra036488.1-P
Bra038162.1-P
Bra038919.1-P
Bra039431.1-P
Bra039688.1-P
Bra040214.1-P
Bra040569.1-P
Bra040831.1-P
Bra040915.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28470.1	Bra010849.1-P	AT1G29150.1	14623884
AT4G28470.1	Bra032291.1-P	AT1G29150.1	14623884
AT4G28470.1	Bra030922.1-P	AT1G53750.1	14623884
AT4G28470.1	Bra039688.1-P	AT1G53750.1	14623884
AT4G28470.1	Bra040569.1-P	AT1G53750.1	14623884
AT4G28470.1	Bra030921.1-P	AT1G53850.1	14623884
AT4G28470.1	Bra027934.1-P	AT1G56450.1	14623884
AT4G28470.1	Bra038162.1-P	AT1G56450.1	14623884
AT4G28470.1	Bra038919.1-P	AT1G56450.1	14623884
AT4G28470.1	Bra027705.1-P	AT1G64520.1	14623884
AT4G28470.1	Bra040915.1-P	AT1G64520.1	14623884
AT4G28470.1	Bra015799.1-P	AT1G75990.1	14623884
AT4G28470.1	Bra013157.1-P	AT2G05840.1	14623884
AT4G28470.1	Bra015170.1-P	AT2G05840.1	14623884
AT4G28470.1	Bra036488.1-P	AT2G20580.1	14623884
AT4G28470.1	Bra005560.1-P	AT2G32730.1	14623884
AT4G28470.1	Bra021810.1-P	AT2G32730.1	14623884
AT4G28470.1	Bra022899.1-P	AT2G32730.1	14623884
AT4G28470.1	Bra001152.1-P	AT3G05530.1	14623884
AT4G28470.1	Bra039431.1-P	AT3G05530.1	14623884
AT4G28470.1	Bra040214.1-P	AT3G05530.1	14623884
AT4G28470.1	Bra023851.1-P	AT3G22110.1	14623884
AT4G28470.1	Bra031328.1-P	AT3G22110.1	14623884
AT4G28470.1	Bra023815.1-P	AT3G22630.1	14623884
AT4G28470.1	Bra040831.1-P	AT3G22630.1	14623884
AT4G28470.1	Bra003428.1-P	AT3G60820.1	14623884
AT4G28470.1	Bra007565.1-P	AT3G60820.1	14623884
AT4G28470.1	Bra014468.1-P	AT3G60820.1	14623884
AT4G28470.1	Bra013838.1-P	AT4G24820.1	14623884
AT4G28470.1	Bra010366.1-P	AT4G28470.1	14623884
AT4G28470.1	Bra011030.1-P	AT4G28470.1	14623884
AT4G28470.1	Bra024200.1-P	AT4G28470.1	14623884
AT4G28470.1	Bra010342.1-P	AT4G29040.1	14623884
AT4G28470.1	Bra011079.1-P	AT4G29040.1	14623884
AT4G28470.1	Bra024165.1-P	AT4G29040.1	14623884
AT4G28470.1	Bra006369.1-P	AT5G05780.1	14623884
AT4G28470.1	Bra017408.1-P	AT5G05780.1	14623884
AT4G28470.1	Bra032422.1-P	AT5G05780.1	14623884
AT4G28470.1	Bra002279.1-P	AT5G19990.1	14623884
AT4G28470.1	Bra006529.1-P	AT5G19990.1	14623884
AT4G28470.1	Bra006530.1-P	AT5G19990.1	14623884
AT4G28470.1	Bra020079.1-P	AT5G19990.1	14623884
AT4G28470.1	Bra002279.1-P	AT5G20000.1	14623884
AT4G28470.1	Bra006529.1-P	AT5G20000.1	14623884
AT4G28470.1	Bra006530.1-P	AT5G20000.1	14623884
AT4G28470.1	Bra020079.1-P	AT5G20000.1	14623884
AT4G28470.1	Bra009693.1-P	AT5G23540.1	14623884
AT4G28470.1	Bra026492.1-P	AT5G23540.1	14623884
AT4G28470.1	Bra029375.1-P	AT5G23540.1	14623884
AT4G28470.1	Bra027456.1-P	AT5G42790.1	14623884
AT4G28470.1	Bra035332.1-P	AT5G42790.1	14623884
AT4G28470.1	Bra025066.1-P	AT5G45620.1	14623884
AT4G28470.1	Bra002662.1-P	AT5G58290.1	14623884
AT4G28470.1	Bra006775.1-P	AT5G58290.1	14623884
AT4G28470.1	Bra020378.1-P	AT5G58290.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29907	Canola	extracellular	99.78	99.78
CDX92875	Canola	extracellular	99.21	99.21
Bra011030.1-P	Field mustard	cytosol	94.5	94.5
AT4G28470.1	Thale cress	cytosol	93.04	93.04
Bra036488.1-P	Field mustard	cytosol, extracellular, plasma membrane	81.48	87.15
Bra010366.1-P	Field mustard	cytosol	84.18	84.65
Solyc07g053650.2.1	Tomato	nucleus	77.22	83.7
VIT_12s0028g03130.t01	Wine grape	cytosol	83.39	83.48
PGSC0003DMT400024306	Potato	cytosol	82.94	82.48
GSMUA_Achr11P...	Banana	cytosol	74.86	75.11
TraesCS6D01G105500.1	Wheat	golgi	74.19	73.85
TraesCS6A01G116500.1	Wheat	golgi, unclear	74.19	73.85
HORVU6Hr1G021020.1	Barley	cytosol	74.07	73.5
Os02t0146700-02	Rice	plasma membrane	74.07	73.5
TraesCS6B01G144500.1	Wheat	cytosol	74.07	73.01
Zm00001d053881_P001	Maize	mitochondrion, plastid	72.84	72.76
Zm00001d015259_P001	Maize	cytosol	72.5	72.58
EES04513	Sorghum	cytosol	72.73	72.48
Os09t0326800-01	Rice	plasma membrane	70.48	70.48
Os06t0699900-01	Rice	plasma membrane	71.04	70.26
Solyc10g008180.1.1	Tomato	plastid	56.79	69.22
KRH57774	Soybean	endoplasmic reticulum, plasma membrane	20.88	63.7
TraesCS7A01G421600.1	Wheat	mitochondrion	54.55	59.49
TraesCS7B01G322000.1	Wheat	cytosol	58.25	58.98
TraesCS7B01G321900.1	Wheat	cytosol	57.13	58.71
TraesCS7D01G413900.1	Wheat	mitochondrion	54.66	58.6
TraesCS7A01G421700.1	Wheat	cytosol	57.35	58.07
TraesCS7D01G413800.1	Wheat	cytosol	37.82	54.35
HORVU7Hr1G097500.16	Barley	endoplasmic reticulum, golgi, plasma membrane	30.64	46.59
GSMUA_Achr1P10580_001	Banana	cytosol, nucleus, plasma membrane	2.81	17.24
Bra003811.1-P	Field mustard	endoplasmic reticulum	4.49	16.26
Bra016824.1-P	Field mustard	plastid, vacuole	6.17	15.94
Bra005560.1-P	Field mustard	plastid	16.39	14.48
Bra021810.1-P	Field mustard	cytosol, plastid	16.16	14.34
Bra022899.1-P	Field mustard	cytosol, plastid	16.16	14.34

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.6.2.2.1	InterPro:26S_Psome_Rpn1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra024200
EnsemblPlants:Bra024200.1	EnsemblPlants:Bra024200.1-P	GO:GO:0000502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056
GO:GO:0019538	GO:GO:0030163	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	InterPro:IPR011989
UniProt:M4E5Z6	PFAM:PF01851	PIRSF:PIRSF015965	PANTHER:PTHR10943	PANTHER:PTHR10943:SF8	InterPro:Proteasome/cyclosome_rpt
SUPFAM:SSF48371	UniParc:UPI0002540C2E	SEG:seg	:	:	:

Description

AT2G20580 (E=0.0) RPN1A, ATRPN1A | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator

Coordinates

chrA03:-:26925729..26930497

Molecular Weight (calculated)

97822.9 Da

IEP (calculated)

4.765

GRAVY (calculated)

-0.072

Length

891 amino acids

Sequence
(BLAST)

001: MAPGPDPNSV GDGAKRDEAT IKVPSKDPKK KDDKKEEDLS EEDLQLKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KEFHKNMAES DLKKLLADIL SVLALTMSAE GQRESLGYRL TGSEGDIGSW GHEYVRNLAG EIAEEYTVRQ GEEASIEDLM DLVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDRTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFEEYPNA LQIALFLDNM QYVKQVFTSC TDLLRKKQFC YMISRHGITF
301: ELDPEMVEND VDREMLQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSADSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAAASLG MILLWDVDAG LTHLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGEYIDKEDS SVRIGAIMGL GIAYAGSQND
501: QIRSSLSPIL NDAKAPLDVI AFAALSLGVI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGL DMAIRSLERV LQYGEQNVRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIVS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGL VHMGKGLLTL SPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E

Best Arabidopsis Sequence Match ( AT4G28470.1 )
(BLAST)

001: MAPVPDPNSV GGGAKRDEAT TKIPSKDSKK KDDKKEEDLS EEDLQLKQNL ELYVERVQDP NPELQKIALE SMRKEIRDST SSMTSVPKPL KFLRPHYGVL
101: KEFHAKMAES DLKKMLADIL SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM DLVQQIVSFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF
301: ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA
401: GNWLFKNKEH GKTSAVASLG MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS SVRIGAIMGL GIAYAGSQND
501: QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT LLHACLDMKS IILGKYHYVL
801: YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E

Arabidopsis Description

RPN1B26S proteasome non-ATPase regulatory subunit 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q6XJG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.