Factsheet for TraesCS5B01G114000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, unclear
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027688_P002	Maize	peroxisome	97.89	97.89
EES10115	Sorghum	peroxisome	97.89	97.89
OQU93221	Sorghum	cytosol	97.47	97.47
TraesCS4B01G151700.1	Wheat	golgi, unclear	96.62	96.62
KRH69234	Soybean	endoplasmic reticulum	96.2	96.2
GSMUA_Achr10P...	Banana	peroxisome	95.78	95.78
GSMUA_Achr11P...	Banana	peroxisome	95.78	95.78
AT1G53850.1	Thale cress	cytosol	95.36	95.36
KRG90710	Soybean	peroxisome	95.36	95.36
KRH31817	Soybean	cytosol	95.36	95.36
KRH36037	Soybean	endoplasmic reticulum, nucleus	95.36	95.36
AT3G14290.1	Thale cress	cytosol	94.94	94.94
PGSC0003DMT400054523	Potato	cytosol	93.67	93.67
Solyc08g016510.2.1	Tomato	extracellular	93.67	93.67
Solyc02g070510.2.1	Tomato	nucleus	93.67	93.67
PGSC0003DMT400024982	Potato	cytosol, nucleus, peroxisome	93.67	93.67
Bra030921.1-P	Field mustard	cytosol	93.67	93.67
TraesCS5D01G121300.1	Wheat	peroxisome	92.83	92.83
TraesCS5A01G109000.1	Wheat	peroxisome	75.11	91.75
CDY08208	Canola	peroxisome	92.41	89.75
CDY51800	Canola	peroxisome	92.41	87.6
CDY02493	Canola	mitochondrion	93.67	79.29
Zm00001d048403_P001	Maize	extracellular	97.05	78.5
CDY25683	Canola	cytosol, plastid	93.67	78.45
VIT_09s0002g00350.t01	Wine grape	endoplasmic reticulum	96.2	77.82
GSMUA_Achr6P10850_001	Banana	mitochondrion	91.14	70.82
TraesCS7B01G030800.1	Wheat	plastid	39.66	37.6
TraesCS5B01G329400.1	Wheat	cytosol	37.97	36.14
TraesCS7B01G170000.1	Wheat	cytosol, golgi, plastid, unclear	37.97	36.14
TraesCS2B01G217800.1	Wheat	cytosol	33.76	34.04
TraesCS3B01G319500.1	Wheat	cytosol	33.76	33.06
TraesCS6B01G126000.1	Wheat	cytosol	36.29	29.76
TraesCS1B01G319100.1	Wheat	cytosol	29.96	28.51
TraesCS5B01G286900.1	Wheat	cytosol	29.96	28.51
TraesCS2B01G196400.1	Wheat	mitochondrion	27.43	22.34

Protein Annotations

MapMan:19.2.6.1.1.5	Gene3D:3.60.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175	GO:GO:0004298
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005839	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773
GO:GO:0043161	GO:GO:0051603	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR11599	PANTHER:PTHR11599:SF14	InterPro:Proteasome_alpha-type
InterPro:Proteasome_alpha_type_5	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	SMART:SM00948	SUPFAM:SSF56235	EnsemblPlantsGene:TraesCS5B01G114000
EnsemblPlants:TraesCS5B01G114000.1	TIGR:cd03753	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:184293281..184298674

Molecular Weight (calculated)

25962.7 Da

IEP (calculated)

4.415

GRAVY (calculated)

-0.203

Length

237 amino acids

Sequence
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGL KTKDGVVLAV EKRVTSPLLE PSSVEKIMEI DEHVGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQAICDLA LRFGEGEEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKELTLQ EAETIALSIL
201: KQVMEEKVTP NNVDIAKVAP NYHLYTPAEV EAVIARL

Best Arabidopsis Sequence Match ( AT1G53850.1 )
(BLAST)

001: MFLTRTEYDR GVNTFSPEGR LFQVEYAIEA IKLGSTAIGV KTKEGVVLAV EKRITSPLLE PSSVEKIMEI DDHIGCAMSG LIADARTLVE HARVETQNHR
101: FSYGEPMTVE STTQALCDLA LRFGEGEEES MSRPFGVSLL IAGHDENGPS LYYTDPSGTF WQCNAKAIGS GSEGADSSLQ EQFNKDLSLQ EAETIAVSIL
201: KQVMEEKVTP NNVDIAKVAP AYHLYTPQEV EAVIARL

Arabidopsis Description

PAE1Proteasome subunit alpha type-5-A [Source:UniProtKB/Swiss-Prot;Acc:O81149]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.