Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
23777608
plasma membrane: 27800704 plastid: 27992503 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 98.21 | 98.0 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 98.21 | 98.0 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 97.77 | 97.99 |
| EER99961 | Sorghum | cytosol | 97.77 | 97.99 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 97.99 | 97.77 |
| Os03t0298400-01 | Rice | plasma membrane | 97.99 | 97.56 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 89.51 | 94.58 |
| Zm00001d007215_P001 | Maize | cytosol | 97.54 | 94.18 |
| KRG95799 | Soybean | cytosol, nucleus | 93.08 | 93.5 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 87.72 | 93.35 |
| KRH67524 | Soybean | nucleus | 92.86 | 93.27 |
| KRH32292 | Soybean | cytosol, nucleus | 92.19 | 93.23 |
| KRH19693 | Soybean | cytosol | 92.19 | 93.23 |
| AT4G29040.1 | Thale cress | cytosol | 91.74 | 92.78 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 91.96 | 92.58 |
| AT2G20140.1 | Thale cress | cytosol | 91.52 | 92.55 |
| CDX97472 | Canola | cytosol | 91.74 | 92.36 |
| Bra010342.1-P | Field mustard | cytosol | 91.52 | 92.13 |
| CDY14224 | Canola | cytosol | 91.52 | 92.13 |
| CDY35245 | Canola | cytosol | 91.07 | 92.1 |
| Bra011079.1-P | Field mustard | cytosol | 91.07 | 92.1 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 91.07 | 91.89 |
| PGSC0003DMT400040872 | Potato | cytosol | 91.07 | 91.89 |
| CDY06847 | Canola | cytosol | 90.85 | 91.87 |
| CDX92914 | Canola | cytosol, extracellular | 90.85 | 91.87 |
| PGSC0003DMT400051744 | Potato | cytosol | 90.62 | 91.44 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 89.51 | 90.93 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 45.54 | 81.27 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 45.09 | 80.48 |
| CDY59958 | Canola | cytosol | 62.5 | 76.92 |
| Bra024165.1-P | Field mustard | cytosol | 55.36 | 76.78 |
| Os02t0784700-00 | Rice | cytosol | 21.21 | 50.53 |
| Os02t0325100-01 | Rice | plastid | 42.19 | 45.11 |
| Os02t0205300-01 | Rice | cytosol | 39.73 | 41.98 |
| Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 40.18 | 41.96 |
| Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 40.18 | 41.96 |
| Os04t0284600-01 | Rice | cytosol | 33.26 | 41.74 |
| Os06t0600100-01 | Rice | plasma membrane | 38.84 | 41.13 |
| Os02t0199900-01 | Rice | nucleus, plasma membrane | 36.61 | 41.0 |
| Os06t0607800-01 | Rice | nucleus | 36.16 | 40.4 |
| Os06t0192600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 37.28 | 39.2 |
| Os09t0560200-01 | Rice | cytosol, mitochondrion | 35.94 | 35.94 |
| Os05t0376200-00 | Rice | cytosol | 23.21 | 26.6 |
| Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 10.27 | 23.59 |
| Os04t0498800-01 | Rice | cytosol | 28.12 | 21.8 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 28.57 | 15.82 |
| Os06t0109400-01 | Rice | cytosol | 25.45 | 14.81 |
| Os08t0556550-01 | Rice | cytosol | 3.35 | 14.02 |
| Os08t0413000-00 | Rice | mitochondrion | 27.9 | 13.83 |
| Os04t0617600-01 | Rice | cytosol | 26.12 | 12.45 |
| Os11t0220400-01 | Rice | mitochondrion | 2.9 | 2.78 |
| Os06t0600301-00 | Rice | plasma membrane | 1.34 | 2.65 |
| Os08t0556400-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 0.22 | 0.14 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | InterPro:26S_subunit_4 | Gene3D:3.40.50.300 |
| EntrezGene:4344373 | InterPro:AAA+_ATPase | EMBL:AK058311 | EMBL:AK099264 | EMBL:AK105861 | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | ProteinID:BAC75555.1 | ProteinID:BAF22633.1 | ProteinID:BAT03341.1 | EMBL:D17789 | GO:GO:0000166 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0017025 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0030433 | GO:GO:0031595 | GO:GO:0031597 | GO:GO:0036402 | GO:GO:0045899 |
| GO:GO:1901800 | EnsemblPlantsGene:Os07g0691800 | EnsemblPlants:Os07t0691800-01 | InterPro:P-loop_NTPase | UniProt:P46466 | PFAM:PF00004 |
| ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF42 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 |
| UniParc:UPI000018D3B7 | RefSeq:XP_015647425.1 | SEG:seg | : | : | : |
Description
rice homolog of human 26S protease subunit 4, rice homolog of human 26S protease S4, 19S regulatory particle ATPase subunit 2a, RP triple A-ATPase 2aSimilar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a). (Os07t0691800-01);Similar to 26S protease regulatory subunit 4 homolog. (Os07t0691800-02);Non-protein coding transcript. (Os07t0691800-03)
Coordinates
chr7:-:29435909..29440130
Molecular Weight (calculated)
49590.0 Da
IEP (calculated)
6.074
GRAVY (calculated)
-0.414
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGTPGGMG KQGGAPGDRK PGGDGDKKDR KFEPPAAPSR VGRKQRKQKG PEAAARLPNV APLSKCRLRL LKLERVKDYL LMEEEFVAAQ ERLRPTEDKT
101: EEDRSKVDDL RGTPMSVGSL EEIIDESHAI VSSSVGPEYY VGILSFVDKD QLEPGCSILM HNKVLSVVGI LQDEVDPMVS VMKVEKAPLE SYADIGGLDA
201: QIQEIKEAVE LPLTHPELYE DIGIRPPKGV ILYGEPGTGK TLLAKAVANS TSATFLRVVG SELIQKYLGD GPKLVRELFR VADELSPSIV FIDEIDAVGT
301: KRYDAHSGGE REIQRTMLEL LNQLDGFDSR GDVKVILATN RIESLDPALL RPGRIDRKIE FPLPDIKTRR RIFQIHTSKM TLADDVNLEE FVMTKDEFSG
401: ADIKAICTEA GLLALRERRM KVTHADFKKA KEKVMFKKKE GVPEGLYM
101: EEDRSKVDDL RGTPMSVGSL EEIIDESHAI VSSSVGPEYY VGILSFVDKD QLEPGCSILM HNKVLSVVGI LQDEVDPMVS VMKVEKAPLE SYADIGGLDA
201: QIQEIKEAVE LPLTHPELYE DIGIRPPKGV ILYGEPGTGK TLLAKAVANS TSATFLRVVG SELIQKYLGD GPKLVRELFR VADELSPSIV FIDEIDAVGT
301: KRYDAHSGGE REIQRTMLEL LNQLDGFDSR GDVKVILATN RIESLDPALL RPGRIDRKIE FPLPDIKTRR RIFQIHTSKM TLADDVNLEE FVMTKDEFSG
401: ADIKAICTEA GLLALRERRM KVTHADFKKA KEKVMFKKKE GVPEGLYM
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.