Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 66.95 | 55.71 |
| Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 65.83 | 54.78 |
| Os02t0784700-00 | Rice | cytosol | 22.97 | 43.62 |
| Os02t0199900-01 | Rice | nucleus, plasma membrane | 39.5 | 35.25 |
| Os06t0607800-01 | Rice | nucleus | 38.94 | 34.66 |
| Os02t0205300-01 | Rice | cytosol | 39.78 | 33.49 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 41.74 | 33.26 |
| Os06t0600100-01 | Rice | plasma membrane | 39.22 | 33.1 |
| Os03t0298400-01 | Rice | plasma membrane | 41.46 | 32.89 |
| Os06t0192600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 37.82 | 31.69 |
| Os02t0325100-01 | Rice | plastid | 35.57 | 30.31 |
| Os09t0560200-01 | Rice | cytosol, mitochondrion | 32.77 | 26.12 |
| Os05t0376200-00 | Rice | cytosol | 27.45 | 25.06 |
| Os10t0442600-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 11.48 | 21.03 |
| Os04t0498800-01 | Rice | cytosol | 30.25 | 18.69 |
| Os03t0151800-02 | Rice | cytosol, extracellular, nucleus, plasma membrane, plastid | 31.09 | 13.72 |
| Os08t0556550-01 | Rice | cytosol | 3.92 | 13.08 |
| Os06t0109400-01 | Rice | cytosol | 26.61 | 12.34 |
| Os08t0413000-00 | Rice | mitochondrion | 30.81 | 12.17 |
| Os04t0617600-01 | Rice | cytosol | 24.65 | 9.36 |
| Os11t0220400-01 | Rice | mitochondrion | 1.96 | 1.5 |
| Os06t0600301-00 | Rice | plasma membrane | 0.56 | 0.88 |
| Os08t0556400-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 0.28 | 0.14 |
Protein Annotations
| Gene3D:1.10.8.60 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:4335380 | InterPro:AAA+_ATPase | EMBL:AK071386 |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ProteinID:BAF14288.1 | ProteinID:BAS88388.1 | ProteinID:CAD40219.2 | ncoils:Coil |
| ProteinID:EEE60671.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 |
| GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0017025 |
| GO:GO:0019538 | GO:GO:0030433 | GO:GO:0031595 | GO:GO:0031597 | GO:GO:0036402 | GO:GO:0045899 |
| GO:GO:1901800 | EnsemblPlantsGene:Os04g0284600 | EnsemblPlants:Os04t0284600-01 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 |
| InterPro:PSMC3 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF7 | UniProt:Q7XW77 | SMART:SM00382 | SUPFAM:SSF52540 |
| UniParc:UPI000021C83B | RefSeq:XP_015634335.1 | SEG:seg | : | : | : |
Description
Similar to TAT-binding protein 1 (Fragment). (Os04t0284600-01)
Coordinates
chr4:-:12252529..12258695
Molecular Weight (calculated)
39510.4 Da
IEP (calculated)
5.200
GRAVY (calculated)
-0.239
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSAAAAAD GGDIEEVDRL KKRIRTLEME ETKLNQHMER VIQGIEANEA YLVGMVLRIM EKGPEDETAE DDCDVGFHLQ RKIIFRPIAG VVYPSKLKPG
101: DLIGVDSTSN EHYCGIGGLE KQIEELVEAV VLPIIHKNCF QRLGIHPPKG VLLYGPPGTG KTLVAHAFAS QTNATFLKLT GPQLAVKLIG EGARLVRDAF
201: QLAKEKAPCI IFIDEIDAIG SKHFDSGDRE VQQTIVELLN QLDGVGSYES IKVIAATNRP EVLDPAFLRS GRLDQKIEFP HPSEQARVRI LEIHSRKMDK
301: NPDVNFEELA CCTDDFNGAQ LKAVCFEASM LAFHRDATEV RHEDFVRAIA QVKDGNY
101: DLIGVDSTSN EHYCGIGGLE KQIEELVEAV VLPIIHKNCF QRLGIHPPKG VLLYGPPGTG KTLVAHAFAS QTNATFLKLT GPQLAVKLIG EGARLVRDAF
201: QLAKEKAPCI IFIDEIDAIG SKHFDSGDRE VQQTIVELLN QLDGVGSYES IKVIAATNRP EVLDPAFLRS GRLDQKIEFP HPSEQARVRI LEIHSRKMDK
301: NPDVNFEELA CCTDDFNGAQ LKAVCFEASM LAFHRDATEV RHEDFVRAIA QVKDGNY
001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Arabidopsis Description
RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.