Factsheet for VIT_09s0002g05800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g04610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	VIT_11s0016g04610.t01	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g04690.t01	Wine grape	cytosol	95.68	95.0
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	93.53	93.53
Solyc05g018590.2.1	Tomato	nucleus	93.05	93.05
CDX70903	Canola	cytosol	92.09	92.31
Zm00001d053616_P002	Maize	cytosol	93.29	92.18
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	93.29	92.18
AT5G19990.1	Thale cress	cytosol	92.57	92.12
CDY35832	Canola	cytosol	92.57	92.12
TraesCS6B01G207100.1	Wheat	cytosol	92.33	92.11
TraesCS6D01G166700.1	Wheat	cytosol, golgi	92.33	92.11
TraesCS6A01G177600.1	Wheat	cytosol	92.33	92.11
Os02t0205300-01	Rice	cytosol	93.29	91.75
Bra002279.1-P	Field mustard	cytosol	92.09	91.65
KRH44668	Soybean	cytosol, mitochondrion, nucleus	91.85	91.63
KRH46990	Soybean	nucleus	91.85	91.63
Bra006529.1-P	Field mustard	cytosol	91.61	91.17
AT5G20000.1	Thale cress	cytosol	91.13	90.69
HORVU7Hr1G084550.2	Barley	cytosol	91.85	90.54
TraesCS7D01G350300.1	Wheat	cytosol	91.85	90.54
TraesCS7B01G254400.1	Wheat	cytosol	91.85	90.54
TraesCS7A01G372600.1	Wheat	cytosol	91.85	90.54
Os06t0600100-01	Rice	plasma membrane	87.53	86.29
EER88603	Sorghum	cytosol	85.61	85.2
HORVU6Hr1G036990.7	Barley	cytosol	92.33	83.33
PGSC0003DMT400038718	Potato	cytosol	82.73	79.68
CDX88865	Canola	cytosol, extracellular	88.01	58.35
CDY42324	Canola	cytosol, extracellular	92.09	53.56
CDY44958	Canola	cytosol, plasma membrane	92.33	53.4
Bra020079.1-P	Field mustard	cytosol	92.09	53.26
VIT_09s0002g00170.t01	Wine grape	cytosol	46.04	45.07
VIT_03s0038g04350.t01	Wine grape	cytosol	41.25	43.11
VIT_18s0001g13090.t01	Wine grape	cytosol	41.01	42.96
VIT_11s0016g00230.t01	Wine grape	cytosol	42.69	41.88
VIT_14s0060g02260.t01	Wine grape	cytosol	39.57	40.74
VIT_05s0020g01180.t01	Wine grape	cytosol	40.29	39.72
VIT_07s0005g05160.t01	Wine grape	cytosol	40.53	37.98
VIT_06s0004g08220.t01	Wine grape	cytosol	37.89	37.8
VIT_06s0061g00340.t01	Wine grape	cytosol	27.82	15.16
VIT_17s0000g08890.t01	Wine grape	cytosol	29.5	15.11
VIT_08s0040g01480.t01	Wine grape	cytosol	29.02	15.01
VIT_01s0010g02600.t01	Wine grape	cytosol	28.54	14.42
VIT_07s0104g01610.t01	Wine grape	cytosol	26.86	11.94
VIT_08s0040g00910.t01	Wine grape	cytosol	27.82	10.95
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	28.3	10.41
Os06t0600301-00	Rice	plasma membrane	1.68	3.1
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100254957	wikigene:100254957	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CBI36245	ProteinID:CBI36245.3
ncoils:Coil	UniProt:D7U0U9	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	EntrezGene:LOC100254957	wikigene:LOC100254957
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57	SMART:SM00382
SUPFAM:SSF52540	TIGR:TC61160	TIGRFAMs:TIGR01242	UniParc:UPI00015C8492	ArrayExpress:VIT_09s0002g05800	EnsemblPlantsGene:VIT_09s0002g05800
EnsemblPlants:VIT_09s0002g05800.t01	unigene:Vvi.1542	RefSeq:XP_002285273	RefSeq:XP_002285273.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:5602960..5610038

Molecular Weight (calculated)

47102.5 Da

IEP (calculated)

9.368

GRAVY (calculated)

-0.413

Length

417 amino acids

Sequence
(BLAST)

001: MATASTERSL AEPMAEERCT AKTKQQGEGL KQYYLQHNHD LQLQVRQKAH NLNRLEAQRN DLNSRVRMLR EELQLLQEPG SYVGEVVKVM GKSKVLVKVH
101: PEGKYVVDID KNIDITKITP STRVALRNDS YVLHLILPSK VDPLVNLMKV EKVPDSTYDM IGGLDQQIKE IKEVIELPIK HPELFESLGI AQPKGVLLYG
201: PPGTGKTLLA RAVAHHTDCT FIRVSGSELV QKYIGEGSRM VRELFVMARE HAPSIIFMDE IDSIGSARME SGSGNGDSEV QRTMLELLNQ LDGFEASNKI
301: KVLMATNRID ILDQALLRPG RIDRKIEFPN PNGESRWDIL KIHSRKMNLM RGIDLKKIAE KMNGASGAEL KAVCTEAGMF ALRERRVHVT QEDFEMAVAK
401: VMKKETEKNM SLRKLWK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.