Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0026g00990.t01 | |
| VIT_09s0018g01940.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09100.1 | VIT_01s0026g00990.t01 | AT1G59900.1 | 24846764 |
| AT1G09100.1 | VIT_09s0018g01940.t01 | AT1G59900.1 | 24846764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0060g02260.t01 | Wine grape | cytosol | 93.38 | 97.53 |
| GSMUA_Achr5P04520_001 | Banana | cytosol | 92.91 | 97.04 |
| GSMUA_Achr9P13230_001 | Banana | cytosol | 92.67 | 96.79 |
| HORVU6Hr1G087650.1 | Barley | cytosol, plasma membrane | 87.0 | 95.83 |
| Solyc01g099760.2.1 | Tomato | nucleus, plastid | 95.27 | 95.27 |
| PGSC0003DMT400063574 | Potato | cytosol | 95.27 | 95.27 |
| Bra001152.1-P | Field mustard | cytosol | 94.56 | 94.34 |
| Bra039431.1-P | Field mustard | cytosol | 94.56 | 94.34 |
| CDY40714 | Canola | cytosol | 94.56 | 94.34 |
| CDY27761 | Canola | cytosol | 94.56 | 94.34 |
| CDY05176 | Canola | cytosol | 94.56 | 94.34 |
| CDX74142 | Canola | cytosol | 94.56 | 94.34 |
| AT1G09100.1 | Thale cress | cytosol | 94.33 | 94.33 |
| Os06t0173100-01 | Rice | cytosol, nucleus, plasma membrane | 95.51 | 94.17 |
| CDY18801 | Canola | cytosol | 94.33 | 94.1 |
| CDY18782 | Canola | cytosol | 94.33 | 94.1 |
| Bra040214.1-P | Field mustard | cytosol | 94.33 | 94.1 |
| Zm00001d037481_P003 | Maize | cytosol, extracellular, plasma membrane | 95.51 | 93.95 |
| EER87942 | Sorghum | cytosol | 95.27 | 93.72 |
| KXG31298 | Sorghum | cytosol | 94.33 | 93.22 |
| Os02t0803700-01 | Rice | cytosol, nucleus, plastid | 94.33 | 93.01 |
| Zm00001d045163_P001 | Maize | mitochondrion | 38.53 | 92.61 |
| KRH68501 | Soybean | nucleus | 91.49 | 91.06 |
| TraesCS3B01G457100.1 | Wheat | cytosol, golgi | 93.38 | 91.01 |
| TraesCS3A01G421900.1 | Wheat | cytosol | 93.38 | 91.01 |
| TraesCS3D01G417000.1 | Wheat | cytosol | 93.14 | 90.78 |
| TraesCS7B01G036400.1 | Wheat | cytosol | 91.02 | 90.16 |
| TraesCS7D01G134800.1 | Wheat | cytosol | 90.78 | 89.51 |
| Zm00001d018409_P007 | Maize | cytosol | 91.96 | 86.83 |
| KRG96790 | Soybean | mitochondrion | 67.38 | 85.84 |
| VIT_03s0038g04350.t01 | Wine grape | cytosol | 38.53 | 40.85 |
| VIT_04s0008g04690.t01 | Wine grape | cytosol | 40.19 | 40.48 |
| VIT_18s0001g13090.t01 | Wine grape | cytosol | 38.06 | 40.45 |
| VIT_09s0002g05800.t01 | Wine grape | cytosol | 39.72 | 40.29 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 42.32 | 40.22 |
| VIT_09s0002g00170.t01 | Wine grape | cytosol | 39.24 | 38.97 |
| VIT_06s0004g08220.t01 | Wine grape | cytosol | 37.59 | 38.04 |
| VIT_11s0016g00230.t01 | Wine grape | cytosol | 37.59 | 37.41 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 28.84 | 15.95 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 30.26 | 15.88 |
| VIT_17s0000g08890.t01 | Wine grape | cytosol | 29.31 | 15.23 |
| VIT_01s0010g02600.t01 | Wine grape | cytosol | 25.53 | 13.09 |
| VIT_07s0104g01610.t01 | Wine grape | cytosol | 26.71 | 12.05 |
| VIT_08s0040g00910.t01 | Wine grape | cytosol | 29.08 | 11.61 |
| VIT_00s0125g00170.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 24.82 | 9.26 |
Protein Annotations
| Gene3D:1.10.8.60 | EntrezGene:100256329 | wikigene:100256329 | EntrezGene:100259757 | wikigene:100259757 | MapMan:19.2.6.2.1.5 |
| Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | EMBL:AM424987 | InterPro:ATPase_AAA_CS |
| InterPro:ATPase_AAA_core | ProteinID:CAN80003 | ProteinID:CAN80003.1 | ProteinID:CBI26046 | ProteinID:CBI26046.3 | ncoils:Coil |
| UniProt:D7T6C5 | EMBL:FN595749 | GO:GO:0000166 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008540 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009987 |
| GO:GO:0010255 | GO:GO:0010498 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0017025 |
| GO:GO:0019538 | GO:GO:0019725 | GO:GO:0030163 | GO:GO:0030433 | GO:GO:0031595 | GO:GO:0031597 |
| GO:GO:0032991 | GO:GO:0036402 | GO:GO:0045899 | GO:GO:1901800 | EntrezGene:LOC100256329 | wikigene:LOC100256329 |
| EntrezGene:LOC100259757 | wikigene:LOC100259757 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | InterPro:PSMC3 |
| PANTHER:PTHR23073 | PANTHER:PTHR23073:SF7 | SMART:SM00382 | SUPFAM:SSF52540 | TIGR:TC68234 | TIGRFAMs:TIGR01242 |
| UniParc:UPI00015C7945 | ArrayExpress:VIT_05s0020g01180 | EnsemblPlantsGene:VIT_05s0020g01180 | EnsemblPlants:VIT_05s0020g01180.t01 | unigene:Vvi.1953 | RefSeq:XP_002271397 |
| RefSeq:XP_002271397.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:2943708..2953657
Molecular Weight (calculated)
47376.8 Da
IEP (calculated)
4.720
GRAVY (calculated)
-0.411
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAMVEDSS FEDDQLASMS TDDIARASRL LDNEIRILKE ELQRTNLELE SFKEKIKENQ EKIKLNKQLP YLVGNIVEIL EMNPEDEAEE DGANVDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDKLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKERFQKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFQLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PSEDARARIL QIHSRKMNVH PDVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVI
401: HEDFNEGIIQ VQAKKKSSLN YYA
101: RKGKCVVLKT STRQTIFLPV VGLVDPDKLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKERFQKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFQLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PSEDARARIL QIHSRKMNVH PDVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVI
401: HEDFNEGIIQ VQAKKKSSLN YYA
001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Arabidopsis Description
RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.