Factsheet for Zm00001d016439_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016410_P006
Zm00001d053613_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19990.1	Zm00001d016410_P006	AT5G19960.1	21798944
AT5G19990.1	Zm00001d053613_P001	AT5G19960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053616_P002	Maize	cytosol	99.76	99.76
Os02t0205300-01	Rice	cytosol	98.82	98.35
TraesCS6A01G177600.1	Wheat	cytosol	96.68	97.61
TraesCS6B01G207100.1	Wheat	cytosol	96.68	97.61
TraesCS6D01G166700.1	Wheat	cytosol, golgi	96.68	97.61
GSMUA_Achr10P...	Banana	cytosol	93.36	93.81
VIT_04s0008g04690.t01	Wine grape	cytosol	92.89	93.33
VIT_09s0002g05800.t01	Wine grape	cytosol	92.18	93.29
AT5G19990.1	Thale cress	cytosol	91.94	92.6
CDY35832	Canola	cytosol	91.94	92.6
CDX70903	Canola	cytosol	91.23	92.55
Bra002279.1-P	Field mustard	cytosol	91.47	92.12
Solyc05g018590.2.1	Tomato	nucleus	91.0	92.09
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	91.0	92.09
Bra006529.1-P	Field mustard	cytosol	90.76	91.41
KRH44668	Soybean	cytosol, mitochondrion, nucleus	90.28	91.15
AT5G20000.1	Thale cress	cytosol	90.05	90.69
KRH46990	Soybean	nucleus	89.81	90.67
HORVU6Hr1G036990.7	Barley	cytosol	96.68	88.31
PGSC0003DMT400038718	Potato	cytosol	81.04	78.98
CDX88865	Canola	cytosol, extracellular	86.97	58.35
CDY42324	Canola	cytosol, extracellular	91.0	53.56
CDY44958	Canola	cytosol, plasma membrane	91.23	53.4
Bra020079.1-P	Field mustard	cytosol	91.0	53.26
Zm00001d045163_P001	Maize	mitochondrion	20.14	48.3
Zm00001d018309_P003	Maize	cytosol	45.26	44.84
Zm00001d053649_P002	Maize	cytosol, mitochondrion	40.76	43.0
Zm00001d015788_P001	Maize	plasma membrane	40.76	43.0
Zm00001d046539_P002	Maize	cytosol, mitochondrion	40.52	42.96
Zm00001d052078_P003	Maize	cytosol	45.26	41.79
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	41.71	39.37
Zm00001d028801_P001	Maize	cytosol, extracellular	41.47	39.24
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	39.81	39.07
Zm00001d007215_P001	Maize	cytosol	41.71	37.93
Zm00001d018409_P007	Maize	cytosol	39.34	37.05
Zm00001d050616_P002	Maize	plastid	37.68	36.64
Zm00001d032117_P001	Maize	cytosol	20.62	27.19
Zm00001d015886_P002	Maize	cytosol	31.04	24.17
Zm00001d009592_P001	Maize	cytosol	14.22	22.9
Zm00001d025776_P002	Maize	cytosol	29.38	21.83
Zm00001d035913_P002	Maize	cytosol, mitochondrion	27.96	16.1
Zm00001d045566_P001	Maize	cytosol, mitochondrion	29.15	16.02
Zm00001d050303_P001	Maize	cytosol	28.91	15.44
Zm00001d027707_P001	Maize	cytosol, plasma membrane	29.38	15.37
Zm00001d022096_P002	Maize	mitochondrion	27.49	15.32
Zm00001d048409_P001	Maize	cytosol	29.15	15.3
Zm00001d032859_P006	Maize	plasma membrane	29.15	15.19
Zm00001d014124_P001	Maize	cytosol, plasma membrane	29.15	15.17
Zm00001d049140_P006	Maize	cytosol, plastid	28.2	11.84
Zm00001d002462_P010	Maize	mitochondrion	26.54	10.54
Zm00001d049974_P004	Maize	peroxisome	25.12	9.51
Zm00001d002717_P001	Maize	mitochondrion	6.64	6.86
Zm00001d053999_P001	Maize	cytosol	6.16	6.33
Zm00001d027244_P001	Maize	cytosol	4.03	4.64
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	0.47	0.79
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100273032	MapMan:19.2.6.2.1.6	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	ProteinID:AQK70751.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:B4FSF1	EMBL:BT040039
EMBL:BT043217	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538
GO:GO:0030163	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF57
SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI00017B74B4	EnsemblPlantsGene:Zm00001d016439	EnsemblPlants:Zm00001d016439_P003
EnsemblPlants:Zm00001d016439_T003	SEG:seg	:	:	:	:

Description

26S protease regulatory subunit 8 homolog B

Coordinates

chr5:+:162354770..162359026

Molecular Weight (calculated)

47203.7 Da

IEP (calculated)

9.354

GRAVY (calculated)

-0.336

Length

422 amino acids

Sequence
(BLAST)

001: MATVAMDISK PTPVASGDEA AAAAKGRSGG GGEGLRQYYL QHIHDLQLQI RQKTHNLNRL EAQRNDLNSR VRMLREELQL LQEPGSYVGE VVKVMGKSKV
101: LVKVHPEGKY VVDIDKSIDI TKITPSTRVA LRNDSYMLHL ILPSKVDPLV NLMKVEKVPD STYDMIGGLD QQIKEIKEVI ELPIKHPELF ESLGIAQPKG
201: VLLYGPPGTG KTLLARAVAH HTDCTFIRVS GSELVQKYIG EGSRMVRELF VMAREHAPSI IFMDEIDSIG SARMESGTGN GDSEVQRTML ELLNQLDGFE
301: ASNKIKVLMA TNRIDILDQA LLRPGRIDRK IEFPNPNEDS RFDILKIHSR KMNLMRGIDL KKIAEKMNGA SGAELKAVCT EAGMFALRER RVHVTQEDFE
401: MAVAKVMKKD TEKNMSLRKL WK

Best Arabidopsis Sequence Match ( AT5G19990.1 )
(BLAST)

001: MAAVGVDSRR PETAMEETCN VKGAAAKQGE GLKQYYLQHI HELQRQLRQK TNNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKI TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK

Arabidopsis Description

RPT6A26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.