Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G154400.1 | Wheat | cytosol | 95.82 | 95.94 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 95.44 | 95.44 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 95.31 | 95.43 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 95.31 | 95.19 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 94.3 | 94.9 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 94.3 | 94.42 |
| TraesCS3B01G171400.1 | Wheat | cytosol | 86.19 | 93.54 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 85.93 | 93.0 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 94.3 | 92.08 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 94.3 | 91.4 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 66.16 | 89.85 |
| EER95525 | Sorghum | cytosol | 84.03 | 85.0 |
| TraesCS1B01G235400.1 | Wheat | cytosol | 69.07 | 84.89 |
| KXG40206 | Sorghum | cytosol | 84.03 | 84.78 |
| KRG99061 | Soybean | cytosol | 21.29 | 84.0 |
| KRG94277 | Soybean | cytosol | 21.93 | 83.57 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 83.52 | 81.76 |
| CDY11249 | Canola | cytosol | 82.51 | 81.58 |
| KRH67721 | Soybean | endoplasmic reticulum, nucleus | 83.52 | 81.56 |
| KRG96011 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 83.4 | 81.44 |
| CDY07941 | Canola | cytosol | 83.4 | 81.33 |
| TraesCS1B01G235300.1 | Wheat | cytosol | 82.38 | 81.25 |
| CDX73996 | Canola | cytosol | 83.27 | 81.21 |
| Bra001297.1-P | Field mustard | cytosol | 83.27 | 81.21 |
| PGSC0003DMT400050662 | Potato | cytosol | 82.76 | 81.12 |
| CDY41316 | Canola | cytosol, extracellular | 83.27 | 81.11 |
| AT3G09840.1 | Thale cress | cytosol | 83.14 | 81.09 |
| TraesCS4B01G268400.1 | Wheat | golgi | 83.52 | 81.06 |
| KRH26511 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 82.89 | 81.04 |
| KRH19916 | Soybean | endoplasmic reticulum, mitochondrion | 83.27 | 81.01 |
| Bra003123.1-P | Field mustard | cytosol | 83.14 | 80.99 |
| Bra034089.1-P | Field mustard | cytosol | 83.14 | 80.99 |
| AT5G03340.1 | Thale cress | cytosol | 83.14 | 80.99 |
| CDY13308 | Canola | cytosol | 83.14 | 80.99 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 82.89 | 80.94 |
| PGSC0003DMT400027096 | Potato | cytosol | 82.89 | 80.94 |
| CDY54618 | Canola | cytosol | 82.89 | 80.94 |
| TraesCS4B01G268200.1 | Wheat | cytosol | 83.78 | 80.91 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 82.51 | 80.87 |
| CDY22207 | Canola | cytosol | 83.02 | 80.86 |
| TraesCS1B01G192400.1 | Wheat | cytosol | 82.76 | 80.82 |
| KRH32530 | Soybean | endoplasmic reticulum, mitochondrion | 83.27 | 80.81 |
| KRH22853 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 82.64 | 80.79 |
| Bra029795.1-P | Field mustard | cytosol | 82.76 | 80.72 |
| CDY41581 | Canola | cytosol | 82.64 | 80.69 |
| TraesCS1B01G235500.1 | Wheat | cytosol | 81.75 | 80.62 |
| Solyc06g074980.2.1 | Tomato | nucleus | 82.26 | 80.62 |
| PGSC0003DMT400031321 | Potato | cytosol | 82.26 | 80.62 |
| AT3G53230.1 | Thale cress | cytosol | 83.27 | 80.61 |
| PGSC0003DMT400055513 | Potato | cytosol | 82.26 | 80.42 |
| CDX80862 | Canola | cytosol, plastid | 82.38 | 80.35 |
| Bra006978.1-P | Field mustard | cytosol | 82.0 | 79.78 |
| KRH30601 | Soybean | cytosol | 81.24 | 79.53 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 81.24 | 79.33 |
| CDX78154 | Canola | cytosol | 74.4 | 78.9 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 76.3 | 78.69 |
| CDX73571 | Canola | cytosol | 73.64 | 78.2 |
| KRH25081 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 70.85 | 77.21 |
| GSMUA_Achr3P00250_001 | Banana | cytosol | 18.25 | 73.47 |
| CDX67563 | Canola | cytosol | 81.5 | 73.15 |
| KRH45638 | Soybean | cytosol | 25.48 | 62.62 |
| Bra005733.1-P | Field mustard | cytosol | 82.64 | 59.06 |
| TraesCS2B01G373100.1 | Wheat | cytosol | 29.66 | 41.12 |
| TraesCS3B01G487900.1 | Wheat | mitochondrion | 32.19 | 34.09 |
| TraesCS7B01G280400.1 | Wheat | cytosol, unclear | 16.86 | 33.25 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 16.73 | 33.0 |
| TraesCS7B01G060900.1 | Wheat | golgi | 17.74 | 32.86 |
| TraesCS7B01G468900.1 | Wheat | cytosol | 16.48 | 32.66 |
| TraesCS6B01G376500.1 | Wheat | golgi | 17.49 | 32.39 |
| TraesCS2B01G100400.1 | Wheat | cytosol, plastid | 16.73 | 31.81 |
| TraesCS2B01G499600.1 | Wheat | cytosol | 16.6 | 31.41 |
| TraesCS7B01G036400.1 | Wheat | cytosol | 16.22 | 29.98 |
| TraesCS3B01G457100.1 | Wheat | cytosol, golgi | 16.48 | 29.95 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 15.21 | 28.71 |
| TraesCS7B01G254400.1 | Wheat | cytosol | 15.21 | 28.37 |
| TraesCS2B01G494200.1 | Wheat | cytosol | 16.35 | 28.29 |
| TraesCS2B01G493900.1 | Wheat | cytosol | 15.97 | 27.81 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 15.84 | 27.78 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 15.46 | 27.17 |
| TraesCS1B01G089700.1 | Wheat | cytosol, plastid | 32.7 | 26.3 |
| TraesCS4B01G108300.1 | Wheat | plastid | 33.21 | 26.2 |
| TraesCS2B01G480000.3 | Wheat | mitochondrion | 27.5 | 23.26 |
| TraesCS7B01G174800.1 | Wheat | cytosol | 22.69 | 17.38 |
| TraesCS5B01G299200.1 | Wheat | mitochondrion | 23.95 | 17.28 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:AAA_ATPase_CDC48 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom |
| InterPro:Cdc48_dom2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF02359 | PFAM:PF02933 | ScanProsite:PS00674 |
| PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SMART:SM00382 | SMART:SM01072 | SMART:SM01073 | SUPFAM:SSF50692 |
| SUPFAM:SSF52540 | SUPFAM:SSF54585 | TIGRFAMs:TIGR01243 | EnsemblPlantsGene:TraesCS1B01G259200 | EnsemblPlants:TraesCS1B01G259200.1 | TIGR:cd00009 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:456711790..456714159
Molecular Weight (calculated)
87258.6 Da
IEP (calculated)
5.190
GRAVY (calculated)
-0.294
Length
789 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVAASKKA ANRLVVEEAT TNDDNSVCTL HPATMEKLSI FKGDIVLLKG KRRHNTVCMA LPDDTCERHK LRINKVARSN LRVCIADVVS VHLCHDAKFG
101: RRVHILPLDD TVEGIAGNLF DAYLKPYFVD AYRPVHKGDL FLVRGGMRSV EFKVMEIDPA VDYCVVAPDT KIFCEGEPVK REDEERLDGV GYDDVGGMGK
201: PLTLIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAKKNAPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLD EDVNLEVVAK DTHGYVGTDL
401: AALCTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALVGTNP SPLRETVVEV PNVSWNDIGG LDGVKRELQE TVQYPVEHPE KFEKFGMSPS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAP CVLFFDELDS IATQRGGRVG DAGGAADRVL NQLLTEMDGM
601: NAKKTVFIIG ATNRPDIIDS ALLRPGRLDQ LIYIPLPDEA SRHQIFKACL RKSPVAKDVD LGALARFTAG FSGADITEIC QKACKYAIRE DIEKDMERQR
701: MGKDTMEVDN GQEEDEVAEI KAAHFEQSMK YARRSVSDTD IRKYQAFAQT LQQSRGFGTE FRFPAQPQAA EAAADTTATA DEDEDDLYK
101: RRVHILPLDD TVEGIAGNLF DAYLKPYFVD AYRPVHKGDL FLVRGGMRSV EFKVMEIDPA VDYCVVAPDT KIFCEGEPVK REDEERLDGV GYDDVGGMGK
201: PLTLIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SESNLRKAFE EAKKNAPSII FIDEIDSIAP
301: NREKTHGEVE RRIVSQLLTL MDGMKARAHV IVMGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLD EDVNLEVVAK DTHGYVGTDL
401: AALCTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALVGTNP SPLRETVVEV PNVSWNDIGG LDGVKRELQE TVQYPVEHPE KFEKFGMSPS
501: KGVLFYGPPG CGKTLLAKAI ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAP CVLFFDELDS IATQRGGRVG DAGGAADRVL NQLLTEMDGM
601: NAKKTVFIIG ATNRPDIIDS ALLRPGRLDQ LIYIPLPDEA SRHQIFKACL RKSPVAKDVD LGALARFTAG FSGADITEIC QKACKYAIRE DIEKDMERQR
701: MGKDTMEVDN GQEEDEVAEI KAAHFEQSMK YARRSVSDTD IRKYQAFAQT LQQSRGFGTE FRFPAQPQAA EAAADTTATA DEDEDDLYK
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
Arabidopsis Description
CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.