Factsheet for Solyc03g033430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	Solyc03g117780.2.1	AT1G16190.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058116	Potato	cytosol	77.06	30.75
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	58.82	24.81
KRH76642	Soybean	cytosol	57.06	23.95
KRH08049	Soybean	cytosol	55.29	23.62
KRH69766	Soybean	cytosol	55.29	23.21
KRH28809	Soybean	nucleus	55.29	23.21
GSMUA_Achr4P25580_001	Banana	cytosol	52.94	22.5
VIT_04s0023g03620.t01	Wine grape	cytosol	52.94	22.28
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	51.18	22.25
Bra010735.1-P	Field mustard	cytosol	48.82	21.67
CDY12093	Canola	cytosol	47.65	21.49
CDX90286	Canola	cytosol, nucleus, plastid	47.65	21.49
AT4G38630.1	Thale cress	cytosol	48.24	21.24
CDX72742	Canola	extracellular	46.47	21.18
CDY22415	Canola	cytosol	46.47	21.07
Bra033573.1-P	Field mustard	cytosol	47.06	21.0
EER92569	Sorghum	cytosol	47.06	19.95
TraesCS4A01G071300.2	Wheat	cytosol	47.06	19.95
TraesCS4D01G227900.2	Wheat	cytosol	47.06	19.95
TraesCS4B01G227200.2	Wheat	cytosol	47.06	19.8
Os03t0243300-01	Rice	plasma membrane	45.29	19.15
GSMUA_Achr11P...	Banana	golgi, vacuole	50.0	18.4
Zm00001d047941_P001	Maize	cytosol	47.06	17.78
Zm00001d028396_P001	Maize	nucleus	47.06	17.7
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	46.47	16.06
Zm00001d040834_P001	Maize	plastid	4.71	4.02
Zm00001d024336_P001	Maize	mitochondrion	1.76	3.16

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0031593
GO:GO:0043161	GO:GO:0043248	UniProt:K4BFL5	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	EnsemblPlantsGene:Solyc03g033430.1
EnsemblPlants:Solyc03g033430.1.1	UniParc:UPI00027679CB	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:4997013..4997793

Molecular Weight (calculated)

18955.6 Da

IEP (calculated)

8.897

GRAVY (calculated)

-0.555

Length

170 amino acids

Sequence
(BLAST)

001: MNLAAELHVA QLDLKHRQNK KHYQRIILFA GRKAEKLEAL VAPVNNNDNS HIIYIPPGAR NLSDVNPIFT KDVDSRKRFV VVASGEGSGY DFGVDPNLDP
101: EIDLALRVSM KEERDRQATA TKKDAQKAQK QENGEMQSTS QTIIMTENVS ARNSETKTKA VDILIGVPLF

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.