Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400036871 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38630.1 | PGSC0003DMT400036871 | AT1G16190.1 | 20059542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g033430.1.1 | Tomato | cytosol | 30.75 | 77.06 |
| PGSC0003DMT400009215 | Potato | cytosol | 63.62 | 67.25 |
| KRH76642 | Soybean | cytosol | 60.8 | 63.95 |
| KRH08049 | Soybean | cytosol | 59.62 | 63.82 |
| KRH69766 | Soybean | cytosol | 60.09 | 63.21 |
| KRH28809 | Soybean | nucleus | 60.09 | 63.21 |
| VIT_04s0023g03620.t01 | Wine grape | cytosol | 58.22 | 61.39 |
| GSMUA_Achr4P25580_001 | Banana | cytosol | 55.4 | 59.0 |
| GSMUA_Achr2P11290_001 | Banana | cytosol, nucleus, plastid | 51.17 | 55.75 |
| TraesCS4D01G227900.2 | Wheat | cytosol | 50.94 | 54.11 |
| TraesCS4A01G071300.2 | Wheat | cytosol | 50.7 | 53.87 |
| EER92569 | Sorghum | cytosol | 50.47 | 53.62 |
| Bra010735.1-P | Field mustard | cytosol | 48.12 | 53.52 |
| Os03t0243300-01 | Rice | plasma membrane | 50.47 | 53.48 |
| AT4G38630.1 | Thale cress | cytosol | 48.36 | 53.37 |
| CDY12093 | Canola | cytosol | 47.18 | 53.32 |
| CDX90286 | Canola | cytosol, nucleus, plastid | 47.18 | 53.32 |
| TraesCS4B01G227200.2 | Wheat | cytosol | 50.47 | 53.22 |
| CDX72742 | Canola | extracellular | 46.24 | 52.81 |
| CDY22415 | Canola | cytosol | 46.24 | 52.53 |
| Bra033573.1-P | Field mustard | cytosol | 46.95 | 52.49 |
| GSMUA_Achr11P... | Banana | golgi, vacuole | 53.29 | 49.13 |
| Zm00001d028396_P001 | Maize | nucleus | 48.12 | 45.35 |
| Zm00001d047941_P001 | Maize | cytosol | 46.48 | 44.0 |
| HORVU4Hr1G063820.1 | Barley | cytosol, mitochondrion, nucleus | 50.7 | 43.9 |
| Zm00001d024336_P001 | Maize | mitochondrion | 7.28 | 32.63 |
| Zm00001d040834_P001 | Maize | plastid | 12.68 | 27.14 |
Protein Annotations
| EntrezGene:102584699 | MapMan:19.2.6.2.2.9 | Gene3D:3.40.50.410 | ncoils:Coil | InterPro:IPR002035 | InterPro:IPR003903 |
| InterPro:IPR036465 | UniProt:M1C253 | PFAM:PF13519 | EnsemblPlantsGene:PGSC0003DMG400022558 | PGSC:PGSC0003DMG400022558 | EnsemblPlants:PGSC0003DMT400058116 |
| PFscan:PS50234 | PFscan:PS50330 | PANTHER:PTHR10223 | PANTHER:PTHR10223:SF5 | SMART:SM00327 | SUPFAM:SSF53300 |
| InterPro:UIM_dom | UniParc:UPI0002963493 | InterPro:VWF_A | SEG:seg | InterPro:vWFA_dom_sf | : |
Description
26S proteasome non-atpase regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400022558]
Coordinates
chr3:-:3444939..3451884
Molecular Weight (calculated)
47210.6 Da
IEP (calculated)
4.764
GRAVY (calculated)
-0.519
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEEAVMICI DNSEWMRNGD YSRNRFDAQY SAFTSICGFK HLANPESTVG ALTMAGKGVR VLITPTNDFG EMLSCINGLN IGGEMNLAAG LQVAQLALKH
101: RQNKKQHQKI ILFAGSPVKE DKRVLEMIGR KLNKHRVALD VINFGQEDNR KAEKLEALVA AVNNNDNSHI IYIPPGARDL SDVLGRLLAI FYHLYFEPDN
201: LHNISYCSSE IGRNPIFTRD VDSRKRFAAV ASGAGSGYDF GVDPNLDPEI ALALRVSMEE ERDRQAAAAK KAAQEAAKQE KGEMQSTSQD VTMTENVSAR
301: KSETKNKAAD LLDNDHSLLQ QALAMSRDDS SSNTATRDTD MSEADFEDRE LLLDLLLFIQ DNSKDETNVT KLLANQSLVP SILASILGVD PNDPSIEVLL
401: ASMQSQSEND ENKEQREDKE QKEDKK
101: RQNKKQHQKI ILFAGSPVKE DKRVLEMIGR KLNKHRVALD VINFGQEDNR KAEKLEALVA AVNNNDNSHI IYIPPGARDL SDVLGRLLAI FYHLYFEPDN
201: LHNISYCSSE IGRNPIFTRD VDSRKRFAAV ASGAGSGYDF GVDPNLDPEI ALALRVSMEE ERDRQAAAAK KAAQEAAKQE KGEMQSTSQD VTMTENVSAR
301: KSETKNKAAD LLDNDHSLLQ QALAMSRDDS SSNTATRDTD MSEADFEDRE LLLDLLLFIQ DNSKDETNVT KLLANQSLVP SILASILGVD PNDPSIEVLL
401: ASMQSQSEND ENKEQREDKE QKEDKK
001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
Arabidopsis Description
RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.