Factsheet for VIT_04s0023g03620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g03680.t01
VIT_09s0018g01400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	VIT_09s0018g01400.t01	AT1G16190.1	20059542
AT4G38630.1	VIT_03s0038g03680.t01	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76642	Soybean	cytosol	85.89	85.68
KRH69766	Soybean	cytosol	85.64	85.43
KRH28809	Soybean	nucleus	84.65	84.44
PGSC0003DMT400009215	Potato	cytosol	83.42	83.62
KRH08049	Soybean	cytosol	82.18	83.42
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	82.92	83.13
VIT_04s0008g00060.t01	Wine grape	nucleus	17.82	69.9
Bra010735.1-P	Field mustard	cytosol	65.59	69.19
Bra033573.1-P	Field mustard	cytosol	65.1	69.03
CDY22415	Canola	cytosol	63.86	68.8
CDX90286	Canola	cytosol, nucleus, plastid	64.11	68.7
CDY12093	Canola	cytosol	63.86	68.44
AT4G38630.1	Thale cress	cytosol	65.35	68.39
CDX72742	Canola	extracellular	62.38	67.56
PGSC0003DMT400058116	Potato	cytosol	61.39	58.22
Solyc03g033430.1.1	Tomato	cytosol	22.28	52.94

Protein Annotations

EntrezGene:100257366	wikigene:100257366	MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	ProteinID:CBI17356	ProteinID:CBI17356.3
ncoils:Coil	UniProt:D7SNX7	EMBL:FN594959	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0031593	GO:GO:0043161	GO:GO:0043248	InterPro:IPR002035	InterPro:IPR003903
InterPro:IPR036465	EntrezGene:LOC100257366	wikigene:LOC100257366	PFAM:PF02809	PFAM:PF13519	PFscan:PS50234
PFscan:PS50330	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	SMART:SM00327	SMART:SM00726	SUPFAM:SSF53300
TIGR:TC60966	TIGR:TC63471	InterPro:UIM_dom	UniParc:UPI000198306E	ArrayExpress:VIT_04s0023g03620	EnsemblPlantsGene:VIT_04s0023g03620
EnsemblPlants:VIT_04s0023g03620.t01	InterPro:VWF_A	unigene:Vvi.12194	RefSeq:XP_002264558	RefSeq:XP_002264558.1	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:20147717..20163459

Molecular Weight (calculated)

42838.1 Da

IEP (calculated)

4.216

GRAVY (calculated)

-0.400

Length

404 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPTRFQAQA DAVNLICGAK TQSNPENTVG VLTMAGKGVR VLVTPTSDLG KILACMHGLE VGGEMNLAAG IQVAQLALKH
101: RQNKKQQQRI IVFAGSPVKY DKKVLEMIGR KLKKNSVAID IVDFGEDDDG KPEKLEALLG SVNNNDSSHI VHVPAGPNAL SDVLISTPIF TGDGEGGSGF
201: AAAAAAAAAG GVAGFDFGVD PNLDPELALA LRVSMEEERA RQEAAAKKAA EEASRQEKEG EQQSSSQDAT MTEHANVAAS DADKKSDLMD DENALLQQAL
301: AMSMDDPATS LAMRDTDMSE AAADDQDLAL ALQLSVQDTG KDSTSQTDMS KLLTDQTFVS SILASLPGVD PNDPSVKDLL ASMQNESESQ QKKNEDKAPD
401: EEDK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.