CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09619
KRH23694
KRH44654
KRH47002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	KRH09619	AT1G16190.1	20059542
AT4G38630.1	KRH23694	AT1G16190.1	20059542
AT4G38630.1	KRH44654	AT1G16190.1	20059542
AT4G38630.1	KRH47002	AT1G16190.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69766	Soybean	cytosol	96.48	94.81
KRH76642	Soybean	cytosol	90.7	89.14
KRH28809	Soybean	nucleus	89.2	87.65
VIT_04s0023g03620.t01	Wine grape	cytosol	83.42	82.18
PGSC0003DMT400009215	Potato	cytosol	81.66	80.65
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	81.16	80.15
GSMUA_Achr4P25580_001	Banana	cytosol	76.38	76.0
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	72.61	73.91
Os03t0243300-01	Rice	plasma membrane	69.85	69.15
EER92569	Sorghum	cytosol	69.1	68.58
TraesCS4D01G227900.2	Wheat	cytosol	68.84	68.33
TraesCS4A01G071300.2	Wheat	cytosol	68.84	68.33
TraesCS4B01G227200.2	Wheat	cytosol	68.59	67.57
Bra010735.1-P	Field mustard	cytosol	63.82	66.32
Bra033573.1-P	Field mustard	cytosol	63.32	66.14
CDY22415	Canola	cytosol	62.06	65.87
CDX90286	Canola	cytosol, nucleus, plastid	62.31	65.78
CDX72742	Canola	extracellular	61.56	65.68
AT4G38630.1	Thale cress	cytosol	63.57	65.54
CDY12093	Canola	cytosol	62.06	65.52
GSMUA_Achr11P...	Banana	golgi, vacuole	72.86	62.77
PGSC0003DMT400058116	Potato	cytosol	63.82	59.62
Zm00001d028396_P001	Maize	nucleus	66.58	58.63
Zm00001d047941_P001	Maize	cytosol	64.07	56.67
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	68.59	55.49
Solyc03g033430.1.1	Tomato	cytosol	23.62	55.29
Zm00001d024336_P001	Maize	mitochondrion	11.81	49.47
Zm00001d040834_P001	Maize	plastid	18.09	36.18

Protein Annotations

EntrezGene:100791370	MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	EMBL:ACUP02010137	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G126300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0031593	GO:GO:0043161
GO:GO:0043248	UniProt:I1MN40	InterPro:IPR002035	InterPro:IPR003903	InterPro:IPR036465	EnsemblPlants:KRH08049
ProteinID:KRH08049	ProteinID:KRH08049.1	PFAM:PF02809	PFAM:PF13519	PFscan:PS50234	PFscan:PS50330
PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	SMART:SM00327	SMART:SM00726	SUPFAM:SSF53300	InterPro:UIM_dom
UniParc:UPI000233B7A1	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr16:+:27758508..27763883

Molecular Weight (calculated)

42438.8 Da

IEP (calculated)

4.348

GRAVY (calculated)

-0.446

Length

398 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRFQAQA DAANLICGAK TQSNPENTVG VLTMAGKGVR VLVTPTSDLG KILACMHGLE IGGEMNLAAG IQVAQLALKH
101: RQNKKQQQRI IVFAGGPVNH EKKMLEMIGR KLKKNSVALD VVNFGEEDEG KTEKLEALLS AVNNNDTSHI VHVPSGPNAL SDVLISTPIF TGDGEGGSGF
201: AAGSVSGFEF GVDPNLDPEL ALALRVSMEE ERARQEAAAK KAAEDAAKQE KDGEQQASPQ DTTMTKGVSA AASEAETKRT DLTVNENALL QQALAMSMDD
301: PTINHDMRDT DMSEAAAEDP ELALALQLSV EDSSKDSASQ SDVSKLLADQ SFVSSILASL PGVDPNDPSV KDLLASLQNQ SEPQQKNEDK PPNEEEKK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.