Factsheet for VIT_04s0008g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g03680.t01
VIT_09s0018g01400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	VIT_09s0018g01400.t01	AT1G16190.1	20059542
AT4G38630.1	VIT_03s0038g03680.t01	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024336_P001	Maize	mitochondrion	30.1	32.63
VIT_04s0023g03620.t01	Wine grape	cytosol	69.9	17.82
Zm00001d040834_P001	Maize	plastid	32.04	16.58
GSMUA_Achr4P25580_001	Banana	cytosol	44.66	11.5
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	39.81	10.49
GSMUA_Achr11P...	Banana	golgi, vacuole	45.63	10.17
EER92569	Sorghum	cytosol	38.84	9.98
Os03t0243300-01	Rice	plasma membrane	38.84	9.95
TraesCS4A01G071300.2	Wheat	cytosol	37.86	9.73
TraesCS4D01G227900.2	Wheat	cytosol	37.86	9.73
TraesCS4B01G227200.2	Wheat	cytosol	37.86	9.65
CDY22415	Canola	cytosol	33.98	9.33
AT4G38630.1	Thale cress	cytosol	34.95	9.33
CDY12093	Canola	cytosol	33.98	9.28
CDX90286	Canola	cytosol, nucleus, plastid	33.98	9.28
Bra033573.1-P	Field mustard	cytosol	33.98	9.19
Bra010735.1-P	Field mustard	cytosol	33.98	9.14
CDX72742	Canola	extracellular	33.01	9.12
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	37.86	7.93
Zm00001d028396_P001	Maize	nucleus	33.98	7.74
Zm00001d047941_P001	Maize	cytosol	27.18	6.22

Protein Annotations

ArrayExpress:VIT_04s0008g00060	EMBL:FN595231	EnsemblPlants:VIT_04s0008g00060.t01	EnsemblPlantsGene:VIT_04s0008g00060	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5
ProteinID:CBI20563	ProteinID:CBI20563.3	UniParc:UPI0001BE1A02	UniProt:D7STG4	MapMan:35.2	:

Description

No Description!

Coordinates

chr4:+:17096..17551

Molecular Weight (calculated)

11331.3 Da

IEP (calculated)

4.210

GRAVY (calculated)

-0.620

Length

103 amino acids

Sequence
(BLAST)

001: MSMEDSATSL ATRDTDMSGA IADDQNLVLT LQLSIQNTGK DSTCQTDTSK LLTYQTFVSS ILAPLLRVNP NNPLVKDLLA SIQNELKSQQ KKNEDKTPDE
101: EDK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.