CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02173
KRH11287
KRH16140
KRH20991
KRH50940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10200.1	KRH02173	AT4G15560.1	24104567
AT1G10200.1	KRH11287	AT4G15560.1	24104567
AT1G10200.1	KRH16140	AT4G15560.1	24104567
AT1G10200.1	KRH20991	AT4G15560.1	24104567
AT1G10200.1	KRH50940	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05574	Soybean	cytosol	97.96	97.96
KRH52104	Soybean	cytosol	92.86	92.86
KRH61425	Soybean	cytosol	91.84	91.84
Solyc12g088320.1.1	Tomato	cytosol	83.67	87.7
PGSC0003DMT400030205	Potato	cytosol	83.16	87.17
VIT_18s0001g09040.t01	Wine grape	cytosol	85.2	84.77
CDY20647	Canola	cytosol	81.63	84.66
Bra018454.1-P	Field mustard	cytosol	81.12	84.13
CDY31040	Canola	cytosol	81.12	84.13
CDX94916	Canola	cytosol	80.61	83.6
AT1G10200.1	Thale cress	cytosol	80.61	83.16
Bra019956.1-P	Field mustard	cytosol	80.1	82.63
CDX93448	Canola	cytosol	80.1	82.63
Solyc04g077780.2.1	Tomato	cytosol	80.61	81.87
PGSC0003DMT400027522	Potato	cytosol	80.61	81.87
KRH35659	Soybean	cytosol	67.86	73.89
KRH54438	Soybean	cytosol	64.8	66.15
KRH33303	Soybean	cytosol	18.37	65.45
KRH63478	Soybean	cytosol	63.78	61.27
KRH03352	Soybean	cytosol	63.78	59.81
KRH15005	Soybean	cytosol	57.65	59.79
KRG90348	Soybean	cytosol	21.94	59.72
KRH57029	Soybean	cytosol	63.78	58.14
KRG97787	Soybean	cytosol	57.65	57.07
KRH31081	Soybean	cytosol	58.16	57.0
KRH00704	Soybean	cytosol	49.49	44.91
KRH65108	Soybean	cytosol	46.94	44.66
KRH59846	Soybean	cytosol	50.51	44.2
KRH40492	Soybean	cytosol	48.98	43.84
KRH48190	Soybean	cytosol	46.94	43.81
KRH41147	Soybean	cytosol	50.51	43.42
KRG93772	Soybean	cytosol	15.82	42.47
KRH73124	Soybean	cytosol	32.14	37.5

Protein Annotations

EnsemblPlants:KRG88767	EnsemblPlantsGene:GLYMA_U030800	EntrezGene:100527547	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	PFAM:PF00412
PFscan:PS50023	ProteinID:KRG88767	ProteinID:KRG88767.1	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI0001D83F92	UniProt:I1M8U3	MapMan:15.5.41	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_28:-:306717..308836

Molecular Weight (calculated)

21706.0 Da

IEP (calculated)

8.708

GRAVY (calculated)

-0.586

Length

196 amino acids

Sequence
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVF HKACFRCHHC KGTLKLSNYN SFEGVLYCKP HFDQLFKRTG SLDKSFEGTP KIAKPEKNLE EKPAAAKVSS
101: MFGGTREKCA GCQKTVYPTE KVTVNGTPYH KSCFKCCHGG CVISPSNYIA HEGKLYCKHH HVQLIKEKGN LTQLEGDNEK SATNGKINGE EVSAET

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.