Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39900.1 | KRG89416 | AT4G19700.1 | 21798944 |
| AT2G39900.1 | KRH11729 | AT4G19700.1 | 21798944 |
| AT2G39900.1 | KRH36722 | AT4G19700.1 | 21798944 |
| AT2G39900.1 | KRH50476 | AT4G19700.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97787 | Soybean | cytosol | 96.5 | 97.47 |
| KRH15005 | Soybean | cytosol | 85.5 | 90.48 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 83.5 | 88.36 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 79.0 | 83.16 |
| GSMUA_Achr10P... | Banana | cytosol | 79.0 | 83.16 |
| PGSC0003DMT400069763 | Potato | cytosol | 78.5 | 83.07 |
| Solyc05g052780.2.1 | Tomato | cytosol | 78.5 | 83.07 |
| AT2G39900.1 | Thale cress | cytosol | 80.5 | 80.5 |
| CDY20498 | Canola | cytosol | 80.0 | 80.0 |
| CDX74822 | Canola | cytosol | 80.0 | 80.0 |
| Bra005003.1-P | Field mustard | cytosol | 79.5 | 79.9 |
| CDX72203 | Canola | cytosol | 79.5 | 79.1 |
| CDY60999 | Canola | cytosol | 79.0 | 79.0 |
| CDY27267 | Canola | cytosol | 79.0 | 78.61 |
| Bra007189.1-P | Field mustard | cytosol | 78.5 | 78.11 |
| EER95125 | Sorghum | cytosol | 75.0 | 76.14 |
| Os03t0266100-01 | Rice | plasma membrane | 74.5 | 76.02 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 74.0 | 74.75 |
| TraesCS4D01G213600.1 | Wheat | cytosol | 74.0 | 72.55 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 74.0 | 72.55 |
| AT3G55770.7 | Thale cress | cytosol | 80.5 | 69.1 |
| KRH33303 | Soybean | cytosol | 17.5 | 63.64 |
| CDY02959 | Canola | mitochondrion | 79.5 | 59.11 |
| KRH61425 | Soybean | cytosol | 57.5 | 58.67 |
| KRH52104 | Soybean | cytosol | 57.5 | 58.67 |
| CDX76073 | Canola | mitochondrion | 79.0 | 58.52 |
| KRG88767 | Soybean | cytosol | 57.0 | 58.16 |
| KRH05574 | Soybean | cytosol | 56.5 | 57.65 |
| KRH54438 | Soybean | cytosol | 54.5 | 56.77 |
| KRH35659 | Soybean | cytosol | 51.0 | 56.67 |
| KRH59846 | Soybean | cytosol | 62.0 | 55.36 |
| KRH65108 | Soybean | cytosol | 56.5 | 54.85 |
| KRG93772 | Soybean | cytosol | 20.0 | 54.79 |
| KRH48190 | Soybean | cytosol | 57.0 | 54.29 |
| KRG90348 | Soybean | cytosol | 19.5 | 54.17 |
| KRH40492 | Soybean | cytosol | 59.0 | 53.88 |
| KRH00704 | Soybean | cytosol | 58.0 | 53.7 |
| KRH73124 | Soybean | cytosol | 45.0 | 53.57 |
| KRH41147 | Soybean | cytosol | 61.0 | 53.51 |
| KRH03352 | Soybean | cytosol | 54.5 | 52.15 |
| KRH63478 | Soybean | cytosol | 52.5 | 51.47 |
| Bra014721.1-P | Field mustard | cytosol, mitochondrion | 79.0 | 50.8 |
| KRH57029 | Soybean | cytosol | 53.0 | 49.3 |
Protein Annotations
| EntrezGene:100786139 | MapMan:15.5.41 | Gene3D:2.10.110.10 | EMBL:ACUP02007121 | EnsemblPlantsGene:GLYMA_11G226400 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0046872 | UniProt:I1LMM9 | InterPro:IPR001781 | EnsemblPlants:KRH31081 | ProteinID:KRH31081 |
| ProteinID:KRH31081.1 | ProteinID:KRH31082.1 | ProteinID:KRH31083.1 | ProteinID:KRH31084.1 | PFAM:PF00412 | ScanProsite:PS00478 |
| PFscan:PS50023 | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF28 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000233D29C |
| InterPro:Znf_LIM | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:32143871..32147322
Molecular Weight (calculated)
21668.7 Da
IEP (calculated)
9.025
GRAVY (calculated)
-0.405
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFIGTQQKC KACEKTVYPV DQLSADGTAY HKACFRCSHC KGTLKLSNYS SMEGVLYCKP HFEQLFKESG SFSKNFQSPA KLADKTTHEL TRSPSKAASM
101: FSGTQEKCAT CGKTAYPLEK VTVEGQAYHK SCFKCSHGGC PITPSNYAAL EGILYCKHHF SQLFKEKGSY NHLTKSASVK RAAAAAATAT ATTVASVPES
101: FSGTQEKCAT CGKTAYPLEK VTVEGQAYHK SCFKCSHGGC PITPSNYAAL EGILYCKHHF SQLFKEKGSY NHLTKSASVK RAAAAAATAT ATTVASVPES
001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
Arabidopsis Description
WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.