Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G213600.1 | Wheat | cytosol | 99.51 | 99.51 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 85.29 | 87.88 |
| EER95125 | Sorghum | cytosol | 84.31 | 87.31 |
| Os03t0266100-01 | Rice | plasma membrane | 83.33 | 86.73 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 73.04 | 78.84 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 72.55 | 77.89 |
| GSMUA_Achr10P... | Banana | cytosol | 72.55 | 77.89 |
| Solyc05g052780.2.1 | Tomato | cytosol | 71.57 | 77.25 |
| PGSC0003DMT400069763 | Potato | cytosol | 71.57 | 77.25 |
| KRH15005 | Soybean | cytosol | 71.08 | 76.72 |
| KRG97787 | Soybean | cytosol | 73.04 | 75.25 |
| CDY20498 | Canola | cytosol | 73.04 | 74.5 |
| CDX74822 | Canola | cytosol | 73.04 | 74.5 |
| Bra005003.1-P | Field mustard | cytosol | 72.55 | 74.37 |
| CDY60999 | Canola | cytosol | 72.55 | 74.0 |
| KRH31081 | Soybean | cytosol | 72.55 | 74.0 |
| AT2G39900.1 | Thale cress | cytosol | 70.1 | 71.5 |
| CDY27267 | Canola | cytosol | 69.61 | 70.65 |
| CDX72203 | Canola | cytosol | 69.61 | 70.65 |
| Bra007189.1-P | Field mustard | cytosol | 69.12 | 70.15 |
| AT3G55770.7 | Thale cress | cytosol | 70.59 | 61.8 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 60.29 | 59.42 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 56.37 | 55.83 |
| CDY02959 | Canola | mitochondrion | 69.61 | 52.79 |
| CDX76073 | Canola | mitochondrion | 69.61 | 52.59 |
| TraesCS1B01G190800.1 | Wheat | cytosol | 53.43 | 52.4 |
| TraesCS5B01G107400.1 | Wheat | cytosol | 47.55 | 49.49 |
| Bra014721.1-P | Field mustard | cytosol, mitochondrion | 69.61 | 45.66 |
| KRH73124 | Soybean | cytosol | 35.78 | 43.45 |
| TraesCS7B01G098800.3 | Wheat | cytosol | 48.53 | 7.89 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G212600.1 | EnsemblPlantsGene:TraesCS4B01G212600 | Gene3D:2.10.110.10 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 |
| PANTHER:PTHR24206:SF52 | PFAM:PF00412 | PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 |
| SUPFAM:SSF57716 | MapMan:15.5.41 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:450914395..450915893
Molecular Weight (calculated)
22151.2 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.442
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSGTQQKCK VCTKTVYPMD QLSTDGAVFH RACFKCHHCK STLSFSSYSS FEGVPYCKPH FAQLFKETGS YNKSFQSQSP AKSATEKLTP ELTRSPSKAA
101: GMFSGTQDKC ATCGKTAYPL EKVTVEEKSY HKSCFKCSHG GCALSPSNYA ALEGILYCKH HFSQLFKEKG SYNHLIKCAS VKRAAEAQTA QAAAQAAPAA
201: AESS
101: GMFSGTQDKC ATCGKTAYPL EKVTVEEKSY HKSCFKCSHG GCALSPSNYA ALEGILYCKH HFSQLFKEKG SYNHLIKCAS VKRAAEAQTA QAAAQAAPAA
201: AESS
001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
Arabidopsis Description
WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.