CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007189.1-P	Field mustard	cytosol	99.5	99.5
CDX72203	Canola	cytosol	99.5	99.5
CDY20498	Canola	cytosol	88.06	88.5
CDX74822	Canola	cytosol	88.06	88.5
CDY60999	Canola	cytosol	86.57	87.0
VIT_13s0019g03280.t01	Wine grape	cytosol	79.1	84.13
Solyc05g052780.2.1	Tomato	cytosol	77.11	82.01
PGSC0003DMT400069763	Potato	cytosol	77.11	82.01
KRG97787	Soybean	cytosol	80.6	81.82
KRH15005	Soybean	cytosol	75.12	79.89
AT3G55770.7	Thale cress	cytosol	92.04	79.4
KRH31081	Soybean	cytosol	78.61	79.0
GSMUA_Achr6P14980_001	Banana	cytosol	74.63	78.95
GSMUA_Achr10P...	Banana	cytosol	74.63	78.95
Os03t0266100-01	Rice	plasma membrane	71.14	72.96
CDY02959	Canola	mitochondrion	97.51	72.86
CDX76073	Canola	mitochondrion	97.01	72.22
EER95125	Sorghum	cytosol	70.15	71.57
Zm00001d028550_P001	Maize	extracellular, mitochondrion	70.15	71.21
TraesCS4B01G212600.1	Wheat	cytosol	70.65	69.61
TraesCS4D01G213600.1	Wheat	cytosol	70.15	69.12
CDX86962	Canola	cytosol	38.31	56.2
CDY45697	Canola	cytosol	50.25	55.8
CDY20647	Canola	cytosol	51.74	55.03
CDY31040	Canola	cytosol	51.24	54.5
CDX89105	Canola	cytosol	56.72	54.03
CDX94916	Canola	cytosol	50.75	53.97
CDX93448	Canola	cytosol	50.75	53.68
CDY38028	Canola	cytosol	54.73	53.66
CDY01571	Canola	cytosol	54.23	53.17
CDY56926	Canola	cytosol	55.72	52.83
CDY15152	Canola	cytosol	53.73	52.68
CDX90059	Canola	cytosol	53.73	52.68
CDX71757	Canola	cytosol	56.22	52.31
CDY48936	Canola	cytosol	56.72	52.29
CDY27358	Canola	cytosol	59.2	51.74
CDY37066	Canola	cytosol	58.71	51.53
CDX74767	Canola	cytosol	57.71	50.66
CDY18899	Canola	cytosol	56.72	50.22
CDX95666	Canola	cytosol	54.23	47.81
CDX83389	Canola	cytosol	53.73	47.79
CDY68273	Canola	cytosol	53.73	47.79
KRH73124	Soybean	cytosol	38.81	46.43

Protein Annotations

EnsemblPlants:CDY27267	EnsemblPlantsGene:GSBRNA2T00037144001	Gene3D:2.10.110.10	GO:A0A078GPY6	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	PFAM:PF00412
PFscan:PS50023	ProteinID:CDY27267	ProteinID:CDY27267.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0004EF4B44	UniProt:A0A078GPY6	MapMan:15.5.41	:	:

Description

BnaA09g35350DBnaA09g35350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPY6]

Coordinates

chrLK032201:-:497416..499355

Molecular Weight (calculated)

21906.1 Da

IEP (calculated)

9.145

GRAVY (calculated)

-0.374

Length

201 amino acids

Sequence
(BLAST)

001: MSSFTGTQQK CKACEKTVYP VELLSADGVS YHKSCFKCSH CKSRLQLSRY SSMEGVLYCK PHYEQLFKES GSFTKNFQSP VKPAAEKSSP ELTRTPSRVA
101: GMFSGTQEKC ATCSKTVYPI EKVTVESQTY HKSCFKCSHG GCPISPSNYA ALEGILYCKH HFAQLFKEKG SYNHLIKSAS IKRSAAAAVA AGAPAAAVPE
201: S

Best Arabidopsis Sequence Match ( AT2G39900.1 )
(BLAST)

001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES

Arabidopsis Description

WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.