CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033233.1-P	Field mustard	cytosol	100.0	100.0
CDY15152	Canola	cytosol	99.02	99.02
CDY01571	Canola	cytosol	95.61	95.61
CDY38028	Canola	cytosol	95.12	95.12
AT1G01780.1	Thale cress	cytosol	93.66	93.66
CDX86962	Canola	cytosol	59.02	88.32
CDY56926	Canola	cytosol	70.24	67.92
CDX89105	Canola	cytosol	69.76	67.77
CDY45697	Canola	cytosol	59.51	67.4
KRH65108	Soybean	cytosol	67.32	66.99
CDX71757	Canola	cytosol	69.27	65.74
KRH48190	Soybean	cytosol	67.32	65.71
CDY48936	Canola	cytosol	69.27	65.14
Solyc10g017520.2.1	Tomato	cytosol	66.34	64.15
PGSC0003DMT400026590	Potato	cytosol	66.34	64.15
CDY27358	Canola	cytosol	71.71	63.91
CDY18899	Canola	cytosol	70.73	63.88
CDX74767	Canola	cytosol	70.73	63.32
CDY37066	Canola	cytosol	70.73	63.32
KRH40492	Soybean	cytosol	67.32	63.01
KRH00704	Soybean	cytosol	66.34	62.96
VIT_15s0046g03370.t01	Wine grape	cytosol	66.34	61.82
PGSC0003DMT400000453	Potato	cytosol	65.85	61.09
Solyc01g094320.2.1	Tomato	cytosol	66.34	60.99
CDY68273	Canola	cytosol	66.34	60.18
CDX83389	Canola	cytosol	66.34	60.18
CDX95666	Canola	cytosol	66.34	59.65
PGSC0003DMT400055738	Potato	cytosol	63.9	57.71
CDX74822	Canola	cytosol	56.1	57.5
CDY20498	Canola	cytosol	56.1	57.5
Solyc05g049870.2.1	Tomato	cytosol	63.41	57.02
CDY60999	Canola	cytosol	55.61	57.0
CDY27267	Canola	cytosol	52.68	53.73
CDX72203	Canola	cytosol	52.68	53.73
CDY20647	Canola	cytosol	44.39	48.15
CDY31040	Canola	cytosol	43.9	47.62
CDX93448	Canola	cytosol	43.9	47.37
CDX94916	Canola	cytosol	43.41	47.09
CDX76073	Canola	mitochondrion	53.17	40.37
CDY02959	Canola	mitochondrion	52.68	40.15

Protein Annotations

EnsemblPlants:CDX90059	EnsemblPlantsGene:GSBRNA2T00150563001	Gene3D:2.10.110.10	GO:A0A078DNI4	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412	PFscan:PS50023	ProteinID:CDX90059	ProteinID:CDX90059.1
ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002545336	MapMan:15.5.41

Description

BnaA10g00230D

Coordinates

chrLK031861:+:1454956..1456400

Molecular Weight (calculated)

22872.1 Da

IEP (calculated)

7.426

GRAVY (calculated)

-0.512

Length

205 amino acids

Sequence
(BLAST)

001: MSFTGTTDKC NVCDKTVYVM DMLSIEGMPY HKSCFKCTHC KGTLVMSNYS SMDGVLYCKT HFDQLFKESG NFSKNFQPGK TEKPEHTKTP SKISSIFCGT
101: QDKCAACEKT VYPLEKVQME GECFHKTCFR CAHGGCTLTH SSYASLDGVL YCRHHFNQLF LEKGNYAHVL QAANHRRTAS GNSLPPEPTE EVAVEAKEEN
201: GVSQS

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.