CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00704	Soybean	cytosol	94.98	96.3
KRH65108	Soybean	cytosol	73.06	77.67
KRH48190	Soybean	cytosol	73.52	76.67
CDY45697	Canola	cytosol	55.71	67.4
CDY38028	Canola	cytosol	63.01	67.32
CDY15152	Canola	cytosol	63.01	67.32
Bra032650.1-P	Field mustard	cytosol	63.01	67.32
Bra033233.1-P	Field mustard	cytosol	63.01	67.32
CDX90059	Canola	cytosol	63.01	67.32
AT3G61230.1	Thale cress	cytosol	65.3	67.14
AT1G01780.1	Thale cress	cytosol	62.56	66.83
CDY01571	Canola	cytosol	62.56	66.83
VIT_15s0046g03370.t01	Wine grape	cytosol	67.12	66.82
CDX86962	Canola	cytosol	41.55	66.42
CDX71757	Canola	cytosol	64.84	65.74
CDY56926	Canola	cytosol	63.47	65.57
CDX89105	Canola	cytosol	63.01	65.4
Bra014447.1-P	Field mustard	cytosol	63.01	65.4
CDY48936	Canola	cytosol	63.93	64.22
PGSC0003DMT400026590	Potato	cytosol	62.1	64.15
Bra007586.1-P	Field mustard	cytosol	63.47	64.06
Solyc10g017520.2.1	Tomato	cytosol	61.64	63.68
Bra039313.1-P	Field mustard	cytosol	62.56	59.83
KRH15005	Soybean	cytosol	51.6	59.79
CDY27358	Canola	cytosol	62.56	59.57
PGSC0003DMT400000453	Potato	cytosol	59.82	59.28
KRG97787	Soybean	cytosol	53.42	59.09
CDY18899	Canola	cytosol	61.19	59.03
KRH31081	Soybean	cytosol	53.88	59.0
CDY37066	Canola	cytosol	61.64	58.95
AT2G45800.1	Thale cress	cytosol	60.73	58.85
Solyc01g094320.2.1	Tomato	cytosol	59.82	58.74
CDX74767	Canola	cytosol	61.19	58.52
Bra004939.1-P	Field mustard	cytosol	61.19	58.52
CDY68273	Canola	cytosol	59.36	57.52
CDX83389	Canola	cytosol	59.36	57.52
Bra000404.1-P	Field mustard	cytosol	59.36	57.52
Solyc05g049870.2.1	Tomato	cytosol	59.36	57.02
CDX95666	Canola	cytosol	58.9	56.58
PGSC0003DMT400055738	Potato	cytosol	58.45	56.39
KRH33303	Soybean	cytosol	13.7	54.55
KRG90348	Soybean	cytosol	16.44	50.0
KRH52104	Soybean	cytosol	44.29	49.49
KRH61425	Soybean	cytosol	44.29	49.49
KRH05574	Soybean	cytosol	44.29	49.49
KRG93772	Soybean	cytosol	16.44	49.32
KRG88767	Soybean	cytosol	43.84	48.98
KRH59846	Soybean	cytosol	49.77	48.66
KRH54438	Soybean	cytosol	42.47	48.44
KRH41147	Soybean	cytosol	49.32	47.37
KRH35659	Soybean	cytosol	38.81	47.22
KRH63478	Soybean	cytosol	41.55	44.61
KRH03352	Soybean	cytosol	41.55	43.54
KRH57029	Soybean	cytosol	41.55	42.33
KRH73124	Soybean	cytosol	30.59	39.88

Protein Annotations

EMBL:ACUP02006038	EnsemblPlants:KRH40492	EnsemblPlantsGene:GLYMA_09G261800	EntrezGene:100788569	Gene3D:2.10.110.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22
PFAM:PF00412	PFscan:PS50023	ProteinID:KRH40492	ProteinID:KRH40492.1	ScanProsite:PS00478	SEG:seg
SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002338A33	UniProt:I1L6M1	MapMan:15.5.41	:

Description

hypothetical protein

Coordinates

chr9:+:47969101..47971369

Molecular Weight (calculated)

24696.9 Da

IEP (calculated)

6.990

GRAVY (calculated)

-0.802

Length

219 amino acids

Sequence
(BLAST)

001: MSFTGTTDKC KACDKTVYVV DMLTLEGIPY HKNCFRCSHC KGCLTMSTYS SMDGVLYCKP HFEQLFKESG NFSKNFQTAK SSDKQNETHK TPNRLSSMFS
101: GTLDKCSVCS KTVYPLEKMT LEGECYHKNC FRCAHAGCHL THSSYAALDG VLYCRHHFQQ LFMEKGNYHH VLQSANHKKN ATQSPAEPAE PAAEGEEEPP
201: KPEESDSEKH TEEKPQNEA

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.