CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89105	Canola	cytosol	93.87	94.31
CDY48936	Canola	cytosol	90.09	87.61
CDX71757	Canola	cytosol	88.21	86.57
CDY45697	Canola	cytosol	73.58	86.19
AT3G61230.1	Thale cress	cytosol	86.32	85.92
CDY18899	Canola	cytosol	77.83	72.69
CDY27358	Canola	cytosol	78.3	72.17
CDX74767	Canola	cytosol	77.83	72.05
CDY37066	Canola	cytosol	77.36	71.62
CDY68273	Canola	cytosol	75.0	70.35
CDX83389	Canola	cytosol	75.0	70.35
CDX90059	Canola	cytosol	67.92	70.24
CDY15152	Canola	cytosol	67.92	70.24
CDX95666	Canola	cytosol	74.53	69.3
CDY38028	Canola	cytosol	66.51	68.78
CDY01571	Canola	cytosol	66.04	68.29
VIT_15s0046g03370.t01	Wine grape	cytosol	70.75	68.18
KRH65108	Soybean	cytosol	66.04	67.96
CDX86962	Canola	cytosol	43.87	67.88
KRH48190	Soybean	cytosol	66.04	66.67
PGSC0003DMT400026590	Potato	cytosol	66.04	66.04
KRH00704	Soybean	cytosol	66.51	65.28
Solyc10g017520.2.1	Tomato	cytosol	65.09	65.09
KRH40492	Soybean	cytosol	65.57	63.47
PGSC0003DMT400000453	Potato	cytosol	66.04	63.35
Solyc01g094320.2.1	Tomato	cytosol	66.51	63.23
Solyc05g049870.2.1	Tomato	cytosol	64.15	59.65
PGSC0003DMT400055738	Potato	cytosol	63.68	59.47
CDY20498	Canola	cytosol	55.66	59.0
CDX74822	Canola	cytosol	55.66	59.0
CDY60999	Canola	cytosol	54.72	58.0
CDX72203	Canola	cytosol	52.83	55.72
CDY27267	Canola	cytosol	52.83	55.72
CDY20647	Canola	cytosol	42.92	48.15
CDY31040	Canola	cytosol	42.45	47.62
CDX93448	Canola	cytosol	42.45	47.37
CDX94916	Canola	cytosol	41.98	47.09
CDY02959	Canola	mitochondrion	53.77	42.38
CDX76073	Canola	mitochondrion	52.83	41.48

Protein Annotations

EnsemblPlants:CDY56926	EnsemblPlantsGene:GSBRNA2T00020279001	Gene3D:2.10.110.10	GO:A0A078J3M1	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ProteinID:CDY56926	ProteinID:CDY56926.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0004EF16EF	UniProt:A0A078J3M1	MapMan:15.5.41	:	:

Description

BnaAnng14450DBnaAnng14450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3M1]

Coordinates

chrLK033532:+:930..1825

Molecular Weight (calculated)

23905.0 Da

IEP (calculated)

6.583

GRAVY (calculated)

-0.697

Length

212 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVM DLMTLEGMRY HKSCFRCSHC NGTLVISNYS SMDGVLYCKP HFEQLFKESG NFSKNFQSAG KTEKTNDVTR APSKLSSFFS
101: GTQDKCPACK KTVYPLEKIT MEGESYHKTC FRCAHGGCPL THSSYAALNG VLYCKVHFSQ LFLEKGNYNH VLQAANNRRT PEEDKIEPNE NEANPKEEEE
201: ETSDAVPEEH ES

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.