Factsheet for PGSC0003DMT400055738

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g049870.2.1	Tomato	cytosol	96.04	95.61
PGSC0003DMT400026590	Potato	cytosol	72.25	77.36
PGSC0003DMT400000453	Potato	cytosol	74.45	76.47
CDX86962	Canola	cytosol	41.41	68.61
VIT_15s0046g03370.t01	Wine grape	cytosol	66.08	68.18
Bra032650.1-P	Field mustard	cytosol	58.15	64.39
CDY38028	Canola	cytosol	58.15	64.39
PGSC0003DMT400069763	Potato	cytosol	53.3	64.02
Bra033233.1-P	Field mustard	cytosol	57.71	63.9
CDX90059	Canola	cytosol	57.71	63.9
CDY01571	Canola	cytosol	57.71	63.9
CDY15152	Canola	cytosol	57.71	63.9
CDY56926	Canola	cytosol	59.47	63.68
KRH65108	Soybean	cytosol	57.71	63.59
AT1G01780.1	Thale cress	cytosol	57.27	63.41
Bra014447.1-P	Field mustard	cytosol	58.59	63.03
CDX89105	Canola	cytosol	58.59	63.03
CDY45697	Canola	cytosol	50.22	62.98
KRH48190	Soybean	cytosol	57.71	62.38
CDX71757	Canola	cytosol	59.03	62.04
AT3G61230.1	Thale cress	cytosol	58.15	61.97
Bra007586.1-P	Field mustard	cytosol	59.03	61.75
CDY48936	Canola	cytosol	59.03	61.47
KRH00704	Soybean	cytosol	57.27	60.19
CDY18899	Canola	cytosol	59.47	59.47
CDY27358	Canola	cytosol	59.91	59.13
CDY37066	Canola	cytosol	59.47	58.95
CDX74767	Canola	cytosol	59.47	58.95
Bra039313.1-P	Field mustard	cytosol	59.47	58.95
Bra004939.1-P	Field mustard	cytosol	59.47	58.95
AT2G45800.1	Thale cress	cytosol	58.59	58.85
KRH40492	Soybean	cytosol	56.39	58.45
CDY68273	Canola	cytosol	55.51	55.75
CDX83389	Canola	cytosol	55.51	55.75
Bra000404.1-P	Field mustard	cytosol	55.07	55.31
CDX95666	Canola	cytosol	55.51	55.26
PGSC0003DMT400014797	Potato	cytosol	39.21	52.98
PGSC0003DMT400083108	Potato	cytosol	40.53	51.4
PGSC0003DMT400030205	Potato	cytosol	41.41	50.27
PGSC0003DMT400062907	Potato	cytosol	41.41	49.74
PGSC0003DMT400059073	Potato	cytosol	40.09	47.15
PGSC0003DMT400027522	Potato	cytosol	39.65	46.63
PGSC0003DMT400007915	Potato	cytosol	40.09	40.81

Protein Annotations

EnsemblPlants:PGSC0003DMT400055738	EnsemblPlantsGene:PGSC0003DMG400021643	EntrezGene:102600566	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	PGSC:PGSC0003DMG400021643	RefSeq:XP_015163375.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0002963672	UniProt:M1BYF1	MapMan:15.5.41	:	:

Description

LIM domain protein 2b [Source:PGSC_GENE;Acc:PGSC0003DMG400021643]

Coordinates

chr5:+:43915616..43918293

Molecular Weight (calculated)

25011.0 Da

IEP (calculated)

7.006

GRAVY (calculated)

-0.710

Length

227 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYFV DLLSADGATF HKSCFKCSHC KGTLVMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQTSS KSEKESSLAK APSKVSAMFS
101: GTQDKCAACS KTVYPLEKVI LEGEAFHKSC FKCAHGGCAL THATYAALDG VLYCKHHFAQ LFMEKGSYQH VLKATTNKKS AVTPVDDDDN NNNNNNNNDD
201: KPAKDDNKAN DHDKADEKEP NDDKEQS

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.