Factsheet for PGSC0003DMT400059073

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g044740.1.1	Tomato	cytosol	95.85	95.85
GSMUA_Achr1P22510_001	Banana	cytosol	76.68	79.14
GSMUA_Achr8P31070_001	Banana	cytosol	77.2	77.2
PGSC0003DMT400030205	Potato	cytosol	74.61	77.01
VIT_03s0091g01010.t01	Wine grape	cytosol	77.2	76.8
EES16055	Sorghum	cytosol	76.17	75.77
Zm00001d035304_P001	Maize	mitochondrion	75.65	74.87
PGSC0003DMT400027522	Potato	cytosol	74.61	74.61
KRH35659	Soybean	cytosol	68.91	73.89
GSMUA_Achr2P06650_001	Banana	cytosol	74.61	73.85
TraesCS5B01G107400.1	Wheat	cytosol	74.61	73.47
Zm00001d041725_P001	Maize	cytosol	74.09	72.96
HORVU5Hr1G028180.1	Barley	cytosol	74.09	72.96
TraesCS5D01G115000.1	Wheat	cytosol	74.09	72.96
PGSC0003DMT400083108	Potato	cytosol	66.84	72.07
Os12t0510900-01	Rice	cytosol	37.31	71.29
PGSC0003DMT400062907	Potato	cytosol	63.21	64.55
TraesCS5A01G103100.2	Wheat	cytosol	74.61	61.28
PGSC0003DMT400069763	Potato	cytosol	51.3	52.38
PGSC0003DMT400014797	Potato	cytosol	38.34	44.05
PGSC0003DMT400026590	Potato	cytosol	47.67	43.4
PGSC0003DMT400000453	Potato	cytosol	46.11	40.27
PGSC0003DMT400055738	Potato	cytosol	47.15	40.09
PGSC0003DMT400007915	Potato	cytosol	37.31	32.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400059073	EnsemblPlantsGene:PGSC0003DMG400022943	EntrezGene:102581320	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	PFAM:PF00412
PFscan:PS50023	PGSC:PGSC0003DMG400022943	RefSeq:XP_006352087.1	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI0002953C9A	UniProt:M1C3R5	MapMan:15.5.41	:	:	:

Description

LIM domain protein PLIM1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022943]

Coordinates

chr11:+:30794089..30795818

Molecular Weight (calculated)

21684.9 Da

IEP (calculated)

8.371

GRAVY (calculated)

-0.459

Length

193 amino acids

Sequence
(BLAST)

001: MTFAGTTQKC NACDKTVYLV DRLAADNRIY HKACFRCYHC KSTLKLSNFN SFEGVIYCRP HFDQLFKRTG SLDKSFEGTP KITKPEKSVD NENGTGAKVS
101: SLFAGTREKC VCCTKTVYPI EKVTVNGAAY HKTCFKCTHG GCTISPSNYI AHEGTLYCKH HHIQLFKEKG NYSQLEIDHE IEPALPPHIA MES

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.