Factsheet for PGSC0003DMT400000453

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094320.2.1	Tomato	cytosol	96.83	95.96
PGSC0003DMT400026590	Potato	cytosol	74.21	77.36
PGSC0003DMT400055738	Potato	cytosol	76.47	74.45
KRH65108	Soybean	cytosol	63.8	68.45
CDX86962	Canola	cytosol	42.08	67.88
VIT_15s0046g03370.t01	Wine grape	cytosol	67.42	67.73
CDY38028	Canola	cytosol	61.54	66.34
Bra032650.1-P	Field mustard	cytosol	61.54	66.34
AT1G01780.1	Thale cress	cytosol	61.54	66.34
CDY56926	Canola	cytosol	63.35	66.04
CDX89105	Canola	cytosol	62.9	65.88
Bra014447.1-P	Field mustard	cytosol	62.9	65.88
CDX90059	Canola	cytosol	61.09	65.85
CDY01571	Canola	cytosol	61.09	65.85
CDY15152	Canola	cytosol	61.09	65.85
Bra033233.1-P	Field mustard	cytosol	61.09	65.85
CDY45697	Canola	cytosol	53.85	65.75
KRH48190	Soybean	cytosol	62.44	65.71
CDX71757	Canola	cytosol	63.8	65.28
Bra007586.1-P	Field mustard	cytosol	63.8	64.98
CDY48936	Canola	cytosol	63.8	64.68
PGSC0003DMT400069763	Potato	cytosol	54.3	63.49
AT3G61230.1	Thale cress	cytosol	61.09	63.38
CDY18899	Canola	cytosol	64.25	62.56
Bra004939.1-P	Field mustard	cytosol	64.71	62.45
CDX74767	Canola	cytosol	64.71	62.45
CDY27358	Canola	cytosol	64.71	62.17
Bra039313.1-P	Field mustard	cytosol	64.25	62.01
CDY37066	Canola	cytosol	63.8	61.57
AT2G45800.1	Thale cress	cytosol	62.9	61.5
KRH00704	Soybean	cytosol	59.73	61.11
KRH40492	Soybean	cytosol	59.28	59.82
CDY68273	Canola	cytosol	61.09	59.73
CDX83389	Canola	cytosol	61.09	59.73
Bra000404.1-P	Field mustard	cytosol	60.63	59.29
CDX95666	Canola	cytosol	61.09	59.21
PGSC0003DMT400014797	Potato	cytosol	41.63	54.76
PGSC0003DMT400083108	Potato	cytosol	40.72	50.28
PGSC0003DMT400062907	Potato	cytosol	42.08	49.21
PGSC0003DMT400030205	Potato	cytosol	39.82	47.06
PGSC0003DMT400059073	Potato	cytosol	40.27	46.11
PGSC0003DMT400027522	Potato	cytosol	39.37	45.08
PGSC0003DMT400007915	Potato	cytosol	42.99	42.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400000453	EnsemblPlantsGene:PGSC0003DMG400000155	EntrezGene:102580228	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	PGSC:PGSC0003DMG400000155	RefSeq:XP_006339787.1	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0002952304	UniProt:M0ZGR3	MapMan:15.5.41	:	:

Description

LIM domain protein PLIM-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400000155]

Coordinates

chr1:-:71900075..71903042

Molecular Weight (calculated)

24531.4 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.697

Length

221 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC SACDKTVYFV DLLSADGVTY HKSCFKCSHC RGTLVMSNYS SMDGILYCKT HFEQLFKESG NFSKNFQNPA KSERQNSLTR APSKLSAMFS
101: GTQDKCAACD KTVYPLEKVT MEGESFHKSC FKCAHGGCAL THATYASLDG NLYCKHHFAQ LFMEKGNYQH VLKAANNKKN SAAITPLNDD ENNAVENTST
201: EENNNNNNNK EPENAEESQE S

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.