Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400058821 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10200.1 | PGSC0003DMT400058821 | AT4G15560.1 | 24104567 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g088320.1.1 | Tomato | cytosol | 98.93 | 98.93 |
| PGSC0003DMT400027522 | Potato | cytosol | 88.77 | 86.01 |
| KRH52104 | Soybean | cytosol | 87.7 | 83.67 |
| KRH05574 | Soybean | cytosol | 87.7 | 83.67 |
| VIT_18s0001g09040.t01 | Wine grape | cytosol | 87.7 | 83.25 |
| KRH61425 | Soybean | cytosol | 87.17 | 83.16 |
| KRG88767 | Soybean | cytosol | 87.17 | 83.16 |
| CDY20647 | Canola | cytosol | 81.28 | 80.42 |
| Bra018454.1-P | Field mustard | cytosol | 80.75 | 79.89 |
| CDY31040 | Canola | cytosol | 80.75 | 79.89 |
| CDX94916 | Canola | cytosol | 80.21 | 79.37 |
| AT1G10200.1 | Thale cress | cytosol | 80.21 | 78.95 |
| CDX93448 | Canola | cytosol | 79.68 | 78.42 |
| Bra019956.1-P | Field mustard | cytosol | 79.68 | 78.42 |
| PGSC0003DMT400083108 | Potato | cytosol | 72.19 | 75.42 |
| PGSC0003DMT400059073 | Potato | cytosol | 77.01 | 74.61 |
| PGSC0003DMT400062907 | Potato | cytosol | 66.31 | 65.61 |
| PGSC0003DMT400069763 | Potato | cytosol | 54.55 | 53.97 |
| PGSC0003DMT400026590 | Potato | cytosol | 48.13 | 42.45 |
| PGSC0003DMT400055738 | Potato | cytosol | 50.27 | 41.41 |
| PGSC0003DMT400014797 | Potato | cytosol | 36.36 | 40.48 |
| PGSC0003DMT400000453 | Potato | cytosol | 47.06 | 39.82 |
| PGSC0003DMT400007915 | Potato | cytosol | 37.43 | 31.39 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400030205 | EnsemblPlantsGene:PGSC0003DMG400011558 | EntrezGene:102591305 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | PFAM:PF00412 |
| PFscan:PS50023 | PGSC:PGSC0003DMG400011558 | RefSeq:XP_006342667.1 | ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 |
| UniParc:UPI000295DE64 | UniProt:M1ATV9 | MapMan:15.5.41 | : | : | : |
Description
Transcription factor LIM [Source:PGSC_GENE;Acc:PGSC0003DMG400011558]
Coordinates
chr12:-:56212993..56215429
Molecular Weight (calculated)
21088.2 Da
IEP (calculated)
9.035
GRAVY (calculated)
-0.605
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAGTTQKC MACEKTVYLV DKLTADNRVF HKACFRCYHC KGTLKLSNYN SFEGVLYCRP HFDQLFKRTG SLDKSFEGTP KIVKPEKDEK PQAAKVSSMF
101: VGTREKCFGC KNTVYPTEKV SVNGTPYHKS CFKCSHGGCV ISPSNYIAHE GRLYCKHHHV QLIKEKGNLS QLEGDHDKNS SVRTTES
101: VGTREKCFGC KNTVYPTEKV SVNGTPYHKS CFKCSHGGCV ISPSNYIAHE GRLYCKHHHV QLIKEKGNLS QLEGDHDKNS SVRTTES
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.