CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90583
CDY09752
CDY52177
CDY64791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10200.1	CDX90583	AT4G15560.1	24104567
AT1G10200.1	CDY09752	AT4G15560.1	24104567
AT1G10200.1	CDY52177	AT4G15560.1	24104567
AT1G10200.1	CDY64791	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019956.1-P	Field mustard	cytosol	100.0	100.0
AT1G10200.1	Thale cress	cytosol	99.47	99.47
CDX94916	Canola	cytosol	98.42	98.94
CDY31040	Canola	cytosol	97.89	98.41
CDY20647	Canola	cytosol	97.37	97.88
KRH61425	Soybean	cytosol	84.21	81.63
KRH52104	Soybean	cytosol	83.68	81.12
Solyc12g088320.1.1	Tomato	cytosol	78.95	80.21
KRG88767	Soybean	cytosol	82.63	80.1
PGSC0003DMT400030205	Potato	cytosol	78.42	79.68
KRH05574	Soybean	cytosol	82.11	79.59
VIT_18s0001g09040.t01	Wine grape	cytosol	81.58	78.68
PGSC0003DMT400027522	Potato	cytosol	78.95	77.72
Solyc04g077780.2.1	Tomato	cytosol	78.42	77.2
CDY20498	Canola	cytosol	55.26	52.5
CDX74822	Canola	cytosol	55.26	52.5
CDY60999	Canola	cytosol	54.74	52.0
CDX72203	Canola	cytosol	53.68	50.75
CDY27267	Canola	cytosol	53.68	50.75
CDX86962	Canola	cytosol	36.32	50.37
CDY01571	Canola	cytosol	47.89	44.39
CDY15152	Canola	cytosol	47.89	44.39
CDX90059	Canola	cytosol	47.37	43.9
CDY38028	Canola	cytosol	47.37	43.9
CDX71757	Canola	cytosol	48.42	42.59
CDY56926	Canola	cytosol	47.37	42.45
CDX89105	Canola	cytosol	46.84	42.18
CDY45697	Canola	cytosol	39.47	41.44
CDY48936	Canola	cytosol	46.84	40.83
CDX74767	Canola	cytosol	47.89	39.74
CDY18899	Canola	cytosol	47.37	39.65
CDY37066	Canola	cytosol	46.84	38.86
CDY27358	Canola	cytosol	46.84	38.7
CDY68273	Canola	cytosol	45.26	38.05
CDX83389	Canola	cytosol	45.26	38.05
CDY02959	Canola	mitochondrion	53.16	37.55
CDX76073	Canola	mitochondrion	53.16	37.41
CDX95666	Canola	cytosol	44.74	37.28

Protein Annotations

EnsemblPlants:CDX93448	EnsemblPlantsGene:GSBRNA2T00156116001	Gene3D:2.10.110.10	GO:A0A078E1K8	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24206	PANTHER:PTHR24206:SF35	PFAM:PF00412	PFscan:PS50023	ProteinID:CDX93448	ProteinID:CDX93448.1
ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI000253E99C	MapMan:15.5.41	:

Description

BnaA06g06000D

Coordinates

chrLK031876:+:240687..242050

Molecular Weight (calculated)

21069.3 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.568

Length

190 amino acids

Sequence
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HRSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Best Arabidopsis Sequence Match ( AT1G10200.1 )
(BLAST)

001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA

Arabidopsis Description

WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.