Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019956.1-P | Field mustard | cytosol | 99.47 | 99.47 |
| CDX93448 | Canola | cytosol | 99.47 | 99.47 |
| Bra018454.1-P | Field mustard | cytosol | 98.42 | 98.94 |
| CDY31040 | Canola | cytosol | 98.42 | 98.94 |
| CDX94916 | Canola | cytosol | 97.89 | 98.41 |
| CDY20647 | Canola | cytosol | 97.89 | 98.41 |
| KRH61425 | Soybean | cytosol | 84.74 | 82.14 |
| KRH52104 | Soybean | cytosol | 84.21 | 81.63 |
| Solyc12g088320.1.1 | Tomato | cytosol | 79.47 | 80.75 |
| KRG88767 | Soybean | cytosol | 83.16 | 80.61 |
| PGSC0003DMT400030205 | Potato | cytosol | 78.95 | 80.21 |
| KRH05574 | Soybean | cytosol | 82.63 | 80.1 |
| VIT_18s0001g09040.t01 | Wine grape | cytosol | 82.11 | 79.19 |
| PGSC0003DMT400027522 | Potato | cytosol | 79.47 | 78.24 |
| Solyc04g077780.2.1 | Tomato | cytosol | 78.95 | 77.72 |
| AT2G39900.1 | Thale cress | cytosol | 56.32 | 53.5 |
| AT3G55770.7 | Thale cress | cytosol | 54.74 | 44.64 |
| AT1G01780.1 | Thale cress | cytosol | 46.84 | 43.41 |
| AT3G61230.1 | Thale cress | cytosol | 45.26 | 40.38 |
| AT2G45800.1 | Thale cress | cytosol | 47.89 | 40.27 |
Protein Annotations
| MapMan:15.5.41 | Gene3D:2.10.110.10 | EntrezGene:837558 | UniProt:A0A178W4R1 | ProteinID:AAD32870.1 | ProteinID:AEE28552.1 |
| EMBL:AF370569 | ArrayExpress:AT1G10200 | EnsemblPlantsGene:AT1G10200 | RefSeq:AT1G10200 | TAIR:AT1G10200 | RefSeq:AT1G10200-TAIR-G |
| EnsemblPlants:AT1G10200.1 | TAIR:AT1G10200.1 | EMBL:AY085377 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0046872 | GO:GO:0051015 | GO:GO:0051017 | InterPro:IPR001781 |
| RefSeq:NP_172491.1 | ProteinID:OAP13490.1 | PFAM:PF00412 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00478 | PFscan:PS50023 |
| PANTHER:PTHR24206 | PANTHER:PTHR24206:SF35 | UniProt:Q94JX5 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI000009EE69 |
| Symbol:WLIM1 | InterPro:Znf_LIM | : | : | : | : |
Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
Coordinates
chr1:-:3346390..3348139
Molecular Weight (calculated)
21041.3 Da
IEP (calculated)
9.035
GRAVY (calculated)
-0.565
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.