Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72203 | Canola | cytosol | 79.4 | 92.04 |
| CDY27267 | Canola | cytosol | 79.4 | 92.04 |
| Bra007189.1-P | Field mustard | cytosol | 78.97 | 91.54 |
| AT2G39900.1 | Thale cress | cytosol | 73.82 | 86.0 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 69.1 | 85.19 |
| Solyc05g052780.2.1 | Tomato | cytosol | 67.38 | 83.07 |
| PGSC0003DMT400069763 | Potato | cytosol | 67.38 | 83.07 |
| KRG97787 | Soybean | cytosol | 69.96 | 82.32 |
| KRH31081 | Soybean | cytosol | 69.1 | 80.5 |
| GSMUA_Achr10P... | Banana | cytosol | 65.24 | 80.0 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 65.24 | 80.0 |
| KRH15005 | Soybean | cytosol | 64.38 | 79.37 |
| Os03t0266100-01 | Rice | plasma membrane | 61.8 | 73.47 |
| EER95125 | Sorghum | cytosol | 60.52 | 71.57 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 60.52 | 71.21 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 61.8 | 70.59 |
| TraesCS4D01G213600.1 | Wheat | cytosol | 61.8 | 70.59 |
| CDX76073 | Canola | mitochondrion | 79.83 | 68.89 |
| CDY02959 | Canola | mitochondrion | 79.4 | 68.77 |
| Bra014721.1-P | Field mustard | cytosol, mitochondrion | 79.83 | 59.81 |
| AT1G10200.1 | Thale cress | cytosol | 44.64 | 54.74 |
| AT2G45800.1 | Thale cress | cytosol | 52.36 | 53.98 |
| AT1G01780.1 | Thale cress | cytosol | 47.21 | 53.66 |
| AT3G61230.1 | Thale cress | cytosol | 46.35 | 50.7 |
| KRH73124 | Soybean | cytosol | 33.05 | 45.83 |
Protein Annotations
| MapMan:15.5.41 | Gene3D:2.10.110.10 | EntrezGene:824743 | ProteinID:AEE79440.1 | ArrayExpress:AT3G55770 | EnsemblPlantsGene:AT3G55770 |
| RefSeq:AT3G55770 | TAIR:AT3G55770 | RefSeq:AT3G55770-TAIR-G | EnsemblPlants:AT3G55770.7 | TAIR:AT3G55770.7 | InterPro:IPR001781 |
| RefSeq:NP_001190099.1 | PFAM:PF00412 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00478 | PFscan:PS50023 | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF28 | SMART:SM00132 | SUPFAM:SSF57716 |
| UniParc:UPI0001E92E86 | InterPro:Znf_LIM | SEG:seg | : | : | : |
Description
GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
Coordinates
chr3:+:20703222..20705206
Molecular Weight (calculated)
25596.5 Da
IEP (calculated)
9.059
GRAVY (calculated)
-0.389
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK IHNPLSYREL ARKPNVLHRC IDPGDIGSCY FNLHVTVESQ TYHKSCFKCS HGGCPISPSN YAALEGILYC KHHFAQLFKE
201: KGSYNHLIKS ASIKRSAAAA VAAGVPAASV PES
101: FSGTQEKCAT CSKTVYPIEK IHNPLSYREL ARKPNVLHRC IDPGDIGSCY FNLHVTVESQ TYHKSCFKCS HGGCPISPSN YAALEGILYC KHHFAQLFKE
201: KGSYNHLIKS ASIKRSAAAA VAAGVPAASV PES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.