Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g031710.2.1 | |
| Solyc02g069180.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39900.1 | Solyc02g031710.2.1 | AT4G19700.1 | 21798944 |
| AT2G39900.1 | Solyc02g069180.2.1 | AT4G19700.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069763 | Potato | cytosol | 100.0 | 100.0 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 87.3 | 87.3 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 83.07 | 82.63 |
| GSMUA_Achr10P... | Banana | cytosol | 82.54 | 82.11 |
| KRH15005 | Soybean | cytosol | 80.42 | 80.42 |
| KRG97787 | Soybean | cytosol | 83.07 | 79.29 |
| KRH31081 | Soybean | cytosol | 83.07 | 78.5 |
| CDX72203 | Canola | cytosol | 82.01 | 77.11 |
| CDY27267 | Canola | cytosol | 82.01 | 77.11 |
| Bra007189.1-P | Field mustard | cytosol | 81.48 | 76.62 |
| CDY60999 | Canola | cytosol | 80.42 | 76.0 |
| Bra005003.1-P | Field mustard | cytosol | 79.89 | 75.88 |
| CDX74822 | Canola | cytosol | 79.89 | 75.5 |
| CDY20498 | Canola | cytosol | 79.89 | 75.5 |
| AT2G39900.1 | Thale cress | cytosol | 79.37 | 75.0 |
| Os03t0266100-01 | Rice | plasma membrane | 75.13 | 72.45 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 75.13 | 71.72 |
| EER95125 | Sorghum | cytosol | 74.6 | 71.57 |
| TraesCS4D01G213600.1 | Wheat | cytosol | 77.25 | 71.57 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 77.25 | 71.57 |
| AT3G55770.7 | Thale cress | cytosol | 83.07 | 67.38 |
| Solyc10g017520.2.1 | Tomato | cytosol | 65.08 | 58.02 |
| Solyc08g080740.2.1 | Tomato | cytosol | 59.26 | 57.73 |
| CDY02959 | Canola | mitochondrion | 81.48 | 57.25 |
| CDX76073 | Canola | mitochondrion | 81.48 | 57.04 |
| Solyc06g071310.2.1 | Tomato | cytosol | 52.91 | 55.87 |
| Solyc08g007940.2.1 | Tomato | cytosol | 59.79 | 54.85 |
| Solyc12g088320.1.1 | Tomato | cytosol | 53.97 | 54.55 |
| Solyc05g049870.2.1 | Tomato | cytosol | 65.08 | 53.95 |
| Solyc01g094320.2.1 | Tomato | cytosol | 63.49 | 53.81 |
| Solyc03g114000.2.1 | Tomato | cytosol | 52.38 | 52.38 |
| Solyc04g077780.2.1 | Tomato | cytosol | 52.38 | 51.3 |
| Solyc11g044740.1.1 | Tomato | cytosol | 52.38 | 51.3 |
| Bra014721.1-P | Field mustard | cytosol, mitochondrion | 82.01 | 49.84 |
| KRH73124 | Soybean | cytosol | 42.33 | 47.62 |
Protein Annotations
| EnsemblPlants:Solyc05g052780.2.1 | EnsemblPlantsGene:Solyc05g052780.2 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF28 | PFAM:PF00412 | PFscan:PS50023 |
| ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI0002765F16 | UniProt:K4C1V8 | MapMan:15.5.41 |
Description
No Description!
Coordinates
chr5:+:62962151..62966110
Molecular Weight (calculated)
20822.9 Da
IEP (calculated)
9.137
GRAVY (calculated)
-0.497
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTGTQQKC KACEKTVYPV ELLSADGISY HKSCFKCTHC KGTLKLSSYS SMEGVLYCKP HFEQLYKESG NFNKNFQSPV KSAEKLTPML TKSPSKAAGM
101: FSGTQEKCAT CGKTAYPLEK VTVENQSYHK SCFKCSHGGC SLNPSNYAAL DGILYCKPHF SQLFKEKGSY NHLIKSASMK RPAATVPDS
101: FSGTQEKCAT CGKTAYPLEK VTVENQSYHK SCFKCSHGGC SLNPSNYAAL DGILYCKPHF SQLFKEKGSY NHLIKSASMK RPAATVPDS
001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
Arabidopsis Description
GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.