Factsheet for Bra007189.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27267	Canola	cytosol	99.5	99.5
CDX72203	Canola	cytosol	99.0	99.0
Bra026940.1-P	Field mustard	cytosol	44.28	96.74
Bra005003.1-P	Field mustard	cytosol	87.06	87.94
VIT_13s0019g03280.t01	Wine grape	cytosol	78.61	83.6
Solyc05g052780.2.1	Tomato	cytosol	76.62	81.48
PGSC0003DMT400069763	Potato	cytosol	76.62	81.48
KRG97787	Soybean	cytosol	80.1	81.31
KRH15005	Soybean	cytosol	74.63	79.37
AT3G55770.7	Thale cress	cytosol	91.54	78.97
KRH31081	Soybean	cytosol	78.11	78.5
GSMUA_Achr6P14980_001	Banana	cytosol	74.13	78.42
GSMUA_Achr10P...	Banana	cytosol	74.13	78.42
Os03t0266100-01	Rice	plasma membrane	70.65	72.45
EER95125	Sorghum	cytosol	69.65	71.07
Zm00001d028550_P001	Maize	extracellular, mitochondrion	69.65	70.71
TraesCS4B01G212600.1	Wheat	cytosol	70.15	69.12
TraesCS4D01G213600.1	Wheat	cytosol	69.65	68.63
Bra014721.1-P	Field mustard	cytosol, mitochondrion	97.01	62.7
Bra018454.1-P	Field mustard	cytosol	51.24	54.5
Bra019956.1-P	Field mustard	cytosol	50.75	53.68
Bra014447.1-P	Field mustard	cytosol	56.22	53.55
Bra032650.1-P	Field mustard	cytosol	54.23	53.17
Bra033233.1-P	Field mustard	cytosol	53.23	52.2
Bra007586.1-P	Field mustard	cytosol	56.22	52.07
Bra039313.1-P	Field mustard	cytosol	58.21	51.09
Bra004939.1-P	Field mustard	cytosol	57.21	50.22
Bra000404.1-P	Field mustard	cytosol	52.74	46.9
KRH73124	Soybean	cytosol	38.81	46.43

Protein Annotations

EnsemblPlants:Bra007189.1	EnsemblPlants:Bra007189.1-P	EnsemblPlantsGene:Bra007189	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF28	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002542AA5
UniProt:M4CSJ7	MapMan:15.5.41	:	:	:	:

Description

AT3G55770 (E=1e-098) | LIM domain-containing protein

Coordinates

chrA09:+:27866339..27867607

Molecular Weight (calculated)

21887.1 Da

IEP (calculated)

9.017

GRAVY (calculated)

-0.368

Length

201 amino acids

Sequence
(BLAST)

001: MSSFTGTQQK CKACEKTVYP VELLSADGVS YHKSCFKCSH CKSRLQLSRY SSMEGVLYCK PHYEQLFKES GSFTKNFQSP VKPAAEKSSP ELTRTPSRVA
101: GMFSGTQEKC ATCSKTVYPI EKVTVESQTY HKSCFKCSHG GCPISPSNYA ALEGILYCKH HFAQLFKEKG SYNHLIKSAS IKHSAAAAVA AGAPAAAVPE
201: S

Best Arabidopsis Sequence Match ( AT3G55770.3 )
(BLAST)

001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES

Arabidopsis Description

GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.