Factsheet for Bra004939.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74767	Canola	cytosol	100.0	100.0
Bra039313.1-P	Field mustard	cytosol	92.14	92.14
AT2G45800.1	Thale cress	cytosol	85.59	86.73
Bra000404.1-P	Field mustard	cytosol	83.84	84.96
Bra014447.1-P	Field mustard	cytosol	71.18	77.25
Bra007586.1-P	Field mustard	cytosol	72.49	76.5
Bra033233.1-P	Field mustard	cytosol	63.32	70.73
Bra032650.1-P	Field mustard	cytosol	62.45	69.76
KRH65108	Soybean	cytosol	60.7	67.48
KRH48190	Soybean	cytosol	59.83	65.24
Solyc10g017520.2.1	Tomato	cytosol	60.26	65.09
PGSC0003DMT400026590	Potato	cytosol	60.26	65.09
PGSC0003DMT400000453	Potato	cytosol	62.45	64.71
VIT_15s0046g03370.t01	Wine grape	cytosol	62.01	64.55
Solyc01g094320.2.1	Tomato	cytosol	62.45	64.13
KRH00704	Soybean	cytosol	58.95	62.5
KRH40492	Soybean	cytosol	58.52	61.19
Bra026940.1-P	Field mustard	cytosol	24.02	59.78
PGSC0003DMT400055738	Potato	cytosol	58.95	59.47
Bra005003.1-P	Field mustard	cytosol	51.53	59.3
Solyc05g049870.2.1	Tomato	cytosol	58.52	58.77
Bra007189.1-P	Field mustard	cytosol	50.22	57.21
Bra018454.1-P	Field mustard	cytosol	40.61	49.21
Bra019956.1-P	Field mustard	cytosol	39.74	47.89
Bra014721.1-P	Field mustard	cytosol, mitochondrion	49.78	36.66

Protein Annotations

EnsemblPlants:Bra004939.1	EnsemblPlants:Bra004939.1-P	EnsemblPlantsGene:Bra004939	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002547FFB
UniProt:M4CL53	MapMan:15.5.41	:	:	:	:

Description

AT2G45800 (E=6e-099) | LIM domain-containing protein

Coordinates

chrA05:-:2574067..2574840

Molecular Weight (calculated)

25033.1 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.634

Length

229 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCSHC NGTLVISNYS SMDGVLYCKT HFEQLFKESG NFSKNFQTGK TEKSNDHMTR APSKLSSFFS
101: GTQDKCATCH KTVYPLEKVN MEGECYHKTC FKCAHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNN VHQAAAKHRR SASSGASSPP SEEQKPEDNA
201: SIPEGEGGGE EEAAPEAAGG EETEPVAES

Best Arabidopsis Sequence Match ( AT2G45800.1 )
(BLAST)

001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES

Arabidopsis Description

PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.