Factsheet for Bra014447.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89105	Canola	cytosol	100.0	100.0
Bra007586.1-P	Field mustard	cytosol	90.05	87.56
AT3G61230.1	Thale cress	cytosol	85.31	84.51
Bra004939.1-P	Field mustard	cytosol	77.25	71.18
Bra039313.1-P	Field mustard	cytosol	77.25	71.18
Bra033233.1-P	Field mustard	cytosol	67.77	69.76
Bra032650.1-P	Field mustard	cytosol	66.35	68.29
VIT_15s0046g03370.t01	Wine grape	cytosol	70.14	67.27
KRH65108	Soybean	cytosol	65.4	66.99
Bra000404.1-P	Field mustard	cytosol	71.56	66.81
KRH48190	Soybean	cytosol	65.88	66.19
PGSC0003DMT400026590	Potato	cytosol	66.35	66.04
Solyc10g017520.2.1	Tomato	cytosol	65.88	65.57
KRH00704	Soybean	cytosol	65.88	64.35
KRH40492	Soybean	cytosol	65.4	63.01
PGSC0003DMT400000453	Potato	cytosol	65.88	62.9
Solyc01g094320.2.1	Tomato	cytosol	66.35	62.78
Bra026940.1-P	Field mustard	cytosol	26.54	60.87
Bra005003.1-P	Field mustard	cytosol	56.4	59.8
Solyc05g049870.2.1	Tomato	cytosol	63.51	58.77
PGSC0003DMT400055738	Potato	cytosol	63.03	58.59
Bra007189.1-P	Field mustard	cytosol	53.55	56.22
Bra018454.1-P	Field mustard	cytosol	42.65	47.62
Bra019956.1-P	Field mustard	cytosol	42.18	46.84
Bra014721.1-P	Field mustard	cytosol, mitochondrion	54.03	36.66

Protein Annotations

EnsemblPlants:Bra014447.1	EnsemblPlants:Bra014447.1-P	EnsemblPlantsGene:Bra014447	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002543A12	UniProt:M4DD79
MapMan:15.5.41	:	:	:	:	:

Description

AT3G61230 (E=7e-109) | LIM domain-containing protein

Coordinates

chrA04:+:680814..681701

Molecular Weight (calculated)

23621.7 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.599

Length

211 amino acids

Sequence
(BLAST)

001: MAFTGTLDKC KACDKTVYVM DLMTLEGMPY HKSCFRCSHC NGTLVISNYS SMDGVLYCKP HFEQLFKESG NFSKNFQSAG KTEKSNDVTR APSKLSSFFS
101: GTQDKCAACK KTVYPLEKMA MEGESYHKTC FRCAHGGCPL THSSYAALNG ILYCKVHFSQ LFLEKGNYNH VLEAANHRRT SEEDKIEPNV NDASPKEEEE
201: TSDAVPEEHE S

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.