CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48190	Soybean	cytosol	94.66	92.86
KRH40492	Soybean	cytosol	77.67	73.06
KRH00704	Soybean	cytosol	76.21	72.69
CDY45697	Canola	cytosol	60.68	69.06
AT1G01780.1	Thale cress	cytosol	68.45	68.78
Bra032650.1-P	Field mustard	cytosol	67.48	67.8
CDY38028	Canola	cytosol	66.99	67.32
Bra033233.1-P	Field mustard	cytosol	66.99	67.32
CDX90059	Canola	cytosol	66.99	67.32
CDY15152	Canola	cytosol	66.99	67.32
CDY01571	Canola	cytosol	66.5	66.83
CDY56926	Canola	cytosol	67.96	66.04
Bra014447.1-P	Field mustard	cytosol	66.99	65.4
CDX89105	Canola	cytosol	66.99	65.4
CDX86962	Canola	cytosol	43.2	64.96
PGSC0003DMT400026590	Potato	cytosol	66.5	64.62
Solyc10g017520.2.1	Tomato	cytosol	66.5	64.62
CDX71757	Canola	cytosol	66.99	63.89
AT3G61230.1	Thale cress	cytosol	66.02	63.85
PGSC0003DMT400000453	Potato	cytosol	68.45	63.8
CDY48936	Canola	cytosol	67.48	63.76
VIT_15s0046g03370.t01	Wine grape	cytosol	67.96	63.64
Bra007586.1-P	Field mustard	cytosol	66.99	63.59
Solyc01g094320.2.1	Tomato	cytosol	68.45	63.23
AT2G45800.1	Thale cress	cytosol	68.45	62.39
Bra039313.1-P	Field mustard	cytosol	68.93	62.01
CDY27358	Canola	cytosol	68.93	61.74
CDY37066	Canola	cytosol	68.45	61.57
CDY18899	Canola	cytosol	67.48	61.23
Bra004939.1-P	Field mustard	cytosol	67.48	60.7
CDX74767	Canola	cytosol	67.48	60.7
CDY68273	Canola	cytosol	65.53	59.73
Bra000404.1-P	Field mustard	cytosol	65.53	59.73
CDX83389	Canola	cytosol	65.53	59.73
KRH15005	Soybean	cytosol	54.37	59.26
CDX95666	Canola	cytosol	65.05	58.77
PGSC0003DMT400055738	Potato	cytosol	63.59	57.71
Solyc05g049870.2.1	Tomato	cytosol	63.59	57.46
KRG97787	Soybean	cytosol	54.37	56.57
KRH31081	Soybean	cytosol	54.85	56.5
KRH59846	Soybean	cytosol	53.4	49.11
KRH33303	Soybean	cytosol	13.11	49.09
KRH41147	Soybean	cytosol	53.4	48.25
KRH52104	Soybean	cytosol	45.63	47.96
KRH61425	Soybean	cytosol	45.63	47.96
KRH05574	Soybean	cytosol	45.63	47.96
KRH54438	Soybean	cytosol	44.17	47.4
KRG90348	Soybean	cytosol	16.5	47.22
KRG88767	Soybean	cytosol	44.66	46.94
KRG93772	Soybean	cytosol	16.5	46.58
KRH35659	Soybean	cytosol	39.32	45.0
KRH63478	Soybean	cytosol	42.72	43.14
KRH03352	Soybean	cytosol	43.69	43.06
KRH57029	Soybean	cytosol	43.69	41.86
KRH73124	Soybean	cytosol	33.5	41.07

Protein Annotations

EMBL:ACUP02001312	EnsemblPlants:KRH65108	EnsemblPlantsGene:GLYMA_03G013900	EntrezGene:100800234	Gene3D:2.10.110.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22
PFAM:PF00412	PFscan:PS50023	ProteinID:KRH65108	ProteinID:KRH65108.1	ScanProsite:PS00478	SEG:seg
SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI00023BD3FC	UniProt:K7KC58	MapMan:15.5.41	:

Description

hypothetical protein

Coordinates

chr3:+:1402507..1404976

Molecular Weight (calculated)

22996.2 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.436

Length

206 amino acids

Sequence
(BLAST)

001: MSFTGTLDKC TACDKTVYVV DLLTLEGITY HKNCFKCSHC KGCLTMSTYS SMDGILYCKT HFEQLFKESG NFSKNFAKSS EKQNDLNRTP SKLSSMFSGT
101: LDKCSVCTKT VYPLEKMTLE GECFHKTCFR CAHAGCPLTH SNYAALDGVL YCRVHFAQLF MEKGNYSHVL QAAAHRRTGS STPPLLEEPS EEPAPESHED
201: KTEDTS

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.