Factsheet for Bra032650.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38028	Canola	cytosol	99.51	99.51
CDY01571	Canola	cytosol	99.02	99.02
Bra033233.1-P	Field mustard	cytosol	95.12	95.12
AT1G01780.1	Thale cress	cytosol	91.22	91.22
KRH65108	Soybean	cytosol	67.8	67.48
Bra014447.1-P	Field mustard	cytosol	68.29	66.35
KRH48190	Soybean	cytosol	67.8	66.19
Bra007586.1-P	Field mustard	cytosol	68.78	64.98
Solyc10g017520.2.1	Tomato	cytosol	66.83	64.62
PGSC0003DMT400026590	Potato	cytosol	66.83	64.62
KRH00704	Soybean	cytosol	67.32	63.89
KRH40492	Soybean	cytosol	67.32	63.01
Bra039313.1-P	Field mustard	cytosol	70.24	62.88
Bra004939.1-P	Field mustard	cytosol	69.76	62.45
VIT_15s0046g03370.t01	Wine grape	cytosol	66.83	62.27
PGSC0003DMT400000453	Potato	cytosol	66.34	61.54
Solyc01g094320.2.1	Tomato	cytosol	66.83	61.44
Bra026940.1-P	Field mustard	cytosol	27.32	60.87
Bra000404.1-P	Field mustard	cytosol	64.88	58.85
Bra005003.1-P	Field mustard	cytosol	57.07	58.79
PGSC0003DMT400055738	Potato	cytosol	64.39	58.15
Solyc05g049870.2.1	Tomato	cytosol	64.39	57.89
Bra007189.1-P	Field mustard	cytosol	53.17	54.23
Bra018454.1-P	Field mustard	cytosol	43.9	47.62
Bra019956.1-P	Field mustard	cytosol	43.9	47.37
Bra014721.1-P	Field mustard	cytosol, mitochondrion	54.15	35.69

Protein Annotations

EnsemblPlants:Bra032650.1	EnsemblPlants:Bra032650.1-P	EnsemblPlantsGene:Bra032650	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22	PFAM:PF00412
PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0002543167
UniProt:M4EV17	MapMan:15.5.41	:	:	:	:

Description

AT1G01780 (E=2e-105) | LIM domain-containing protein

Coordinates

chrA09:+:37017341..37018472

Molecular Weight (calculated)

22928.1 Da

IEP (calculated)

7.191

GRAVY (calculated)

-0.557

Length

205 amino acids

Sequence
(BLAST)

001: MSFTGTTDKC NVCDKTVYVM DMLSIEGMPY HKSCFKCTHC KGTLVMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPEQNKTP SKISSIFCGT
101: QDKCAACDKT VYPLEKVQME GECFHKTCFK CAHGGCMLTH SSYASLDGVL YCRHHFNQLF LEKGNYAHVL QSANHRRTAS GNTLPPETTE EVAVEAKEEN
201: GDSQS

Best Arabidopsis Sequence Match ( AT1G01780.1 )
(BLAST)

001: MSFTGTLDKC NVCDKTVYVV DMLSIEGMPY HKSCFRCTHC KGTLQMSNYS SMDGVLYCKT HFEQLFKESG NFSKNFQPGK TEKPELTRTP SKISSIFCGT
101: QDKCAACEKT VYPLEKIQME GECFHKTCFR CAHGGCTLTH SSYASLDSVL YCRHHFNQLF MEKGNYAHVL QAANHRRTAS GNTLPPEPTE DVAVEAKEEN
201: GVSES

Arabidopsis Description

PLIM2BLIM domain-containing protein PLIM2b [Source:UniProtKB/Swiss-Prot;Acc:Q1ECF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.