CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65108	Soybean	cytosol	92.86	94.66
KRH00704	Soybean	cytosol	75.71	73.61
KRH40492	Soybean	cytosol	76.67	73.52
CDY45697	Canola	cytosol	61.43	71.27
AT1G01780.1	Thale cress	cytosol	67.62	69.27
Bra032650.1-P	Field mustard	cytosol	66.19	67.8
CDY38028	Canola	cytosol	65.71	67.32
Bra033233.1-P	Field mustard	cytosol	65.71	67.32
CDY15152	Canola	cytosol	65.71	67.32
CDX90059	Canola	cytosol	65.71	67.32
CDY01571	Canola	cytosol	65.24	66.83
CDY56926	Canola	cytosol	66.67	66.04
CDX89105	Canola	cytosol	66.19	65.88
Bra014447.1-P	Field mustard	cytosol	66.19	65.88
AT3G61230.1	Thale cress	cytosol	66.67	65.73
CDX86962	Canola	cytosol	42.86	65.69
PGSC0003DMT400026590	Potato	cytosol	65.24	64.62
Solyc10g017520.2.1	Tomato	cytosol	65.24	64.62
VIT_15s0046g03370.t01	Wine grape	cytosol	67.14	64.09
CDX71757	Canola	cytosol	65.71	63.89
CDY48936	Canola	cytosol	66.19	63.76
Bra007586.1-P	Field mustard	cytosol	65.71	63.59
PGSC0003DMT400000453	Potato	cytosol	65.71	62.44
Solyc01g094320.2.1	Tomato	cytosol	65.71	61.88
Bra039313.1-P	Field mustard	cytosol	67.14	61.57
AT2G45800.1	Thale cress	cytosol	66.19	61.5
CDY37066	Canola	cytosol	66.67	61.14
CDY27358	Canola	cytosol	66.67	60.87
CDY18899	Canola	cytosol	65.24	60.35
Bra004939.1-P	Field mustard	cytosol	65.24	59.83
CDX74767	Canola	cytosol	65.24	59.83
KRH15005	Soybean	cytosol	53.81	59.79
CDY68273	Canola	cytosol	63.33	58.85
CDX83389	Canola	cytosol	63.33	58.85
Bra000404.1-P	Field mustard	cytosol	62.86	58.41
CDX95666	Canola	cytosol	62.86	57.89
PGSC0003DMT400055738	Potato	cytosol	62.38	57.71
Solyc05g049870.2.1	Tomato	cytosol	62.38	57.46
KRG97787	Soybean	cytosol	53.81	57.07
KRH31081	Soybean	cytosol	54.29	57.0
KRH33303	Soybean	cytosol	12.86	49.09
KRH59846	Soybean	cytosol	50.95	47.77
KRH52104	Soybean	cytosol	44.29	47.45
KRH61425	Soybean	cytosol	44.29	47.45
KRH05574	Soybean	cytosol	44.29	47.45
KRG90348	Soybean	cytosol	16.19	47.22
KRG88767	Soybean	cytosol	43.81	46.94
KRH41147	Soybean	cytosol	50.95	46.93
KRH54438	Soybean	cytosol	42.86	46.88
KRG93772	Soybean	cytosol	16.19	46.58
KRH35659	Soybean	cytosol	38.1	44.44
KRH63478	Soybean	cytosol	41.43	42.65
KRH03352	Soybean	cytosol	42.38	42.58
KRH57029	Soybean	cytosol	42.38	41.4
KRH73124	Soybean	cytosol	32.38	40.48

Protein Annotations

EntrezGene:100305845	MapMan:15.5.41	Gene3D:2.10.110.10	EMBL:ACUP02004210	EMBL:BT089644	UniProt:C6SWV0
EnsemblPlantsGene:GLYMA_07G073600	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	EnsemblPlants:KRH48190
ProteinID:KRH48190	ProteinID:KRH48190.1	PFAM:PF00412	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF22
SMART:SM00132	SUPFAM:SSF57716	UniParc:UPI0001B150A6	InterPro:Znf_LIM	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:6701040..6703732

Molecular Weight (calculated)

23497.9 Da

IEP (calculated)

6.811

GRAVY (calculated)

-0.464

Length

210 amino acids

Sequence
(BLAST)

001: MSFTGTLDKC TACDKTVYVV DLLTLEGIPY HKNCFKCSHC KGCLTMCTYS SMDGILYCKT HFEQLFKESG NFSKNFAKSS EKQNELNRTP SKLSSMFSGT
101: QDKCSVCTKT VYPLEKMTLE GECFHKTCFR CAHAGCPLTH SNYAALDGVL YCRVHFAQLF MEKGNYNHVL QAAAHRRTGS STPPLLEEPS QEPAPPASHE
201: DQTEEETPLE

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.