Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
- cytosol 2
- nucleus 1
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G39900.1 | KRG89416 | AT4G19700.1 | 21798944 |
AT2G39900.1 | KRH11729 | AT4G19700.1 | 21798944 |
AT2G39900.1 | KRH36722 | AT4G19700.1 | 21798944 |
AT2G39900.1 | KRH50476 | AT4G19700.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH33303 | Soybean | cytosol | 18.45 | 56.36 |
KRH15005 | Soybean | cytosol | 54.76 | 48.68 |
KRG90348 | Soybean | cytosol | 20.24 | 47.22 |
VIT_13s0019g03280.t01 | Wine grape | cytosol | 51.79 | 46.03 |
KRG97787 | Soybean | cytosol | 53.57 | 45.45 |
KRH31081 | Soybean | cytosol | 53.57 | 45.0 |
PGSC0003DMT400069763 | Potato | cytosol | 47.62 | 42.33 |
Solyc05g052780.2.1 | Tomato | cytosol | 47.62 | 42.33 |
GSMUA_Achr6P14980_001 | Banana | cytosol | 46.43 | 41.05 |
GSMUA_Achr10P... | Banana | cytosol | 45.83 | 40.53 |
KRG93772 | Soybean | cytosol | 17.26 | 39.73 |
Bra005003.1-P | Field mustard | cytosol | 47.02 | 39.7 |
CDX74822 | Canola | cytosol | 47.02 | 39.5 |
CDY20498 | Canola | cytosol | 47.02 | 39.5 |
CDY60999 | Canola | cytosol | 47.02 | 39.5 |
CDX72203 | Canola | cytosol | 46.43 | 38.81 |
Bra007189.1-P | Field mustard | cytosol | 46.43 | 38.81 |
CDY27267 | Canola | cytosol | 46.43 | 38.81 |
AT2G39900.1 | Thale cress | cytosol | 45.83 | 38.5 |
Os03t0266100-01 | Rice | plasma membrane | 43.45 | 37.24 |
EER95125 | Sorghum | cytosol | 43.45 | 37.06 |
Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 43.45 | 36.87 |
TraesCS4B01G212600.1 | Wheat | cytosol | 43.45 | 35.78 |
TraesCS4D01G213600.1 | Wheat | cytosol | 43.45 | 35.78 |
KRH35659 | Soybean | cytosol | 36.9 | 34.44 |
KRH65108 | Soybean | cytosol | 41.07 | 33.5 |
KRH61425 | Soybean | cytosol | 38.69 | 33.16 |
KRH52104 | Soybean | cytosol | 38.69 | 33.16 |
AT3G55770.7 | Thale cress | cytosol | 45.83 | 33.05 |
KRH54438 | Soybean | cytosol | 37.5 | 32.81 |
KRH48190 | Soybean | cytosol | 40.48 | 32.38 |
KRH05574 | Soybean | cytosol | 37.5 | 32.14 |
KRG88767 | Soybean | cytosol | 37.5 | 32.14 |
KRH40492 | Soybean | cytosol | 39.88 | 30.59 |
KRH00704 | Soybean | cytosol | 39.29 | 30.56 |
CDY02959 | Canola | mitochondrion | 48.81 | 30.48 |
KRH63478 | Soybean | cytosol | 36.9 | 30.39 |
CDX76073 | Canola | mitochondrion | 48.21 | 30.0 |
KRH59846 | Soybean | cytosol | 39.88 | 29.91 |
KRH03352 | Soybean | cytosol | 36.31 | 29.19 |
KRH41147 | Soybean | cytosol | 39.29 | 28.95 |
KRH57029 | Soybean | cytosol | 35.71 | 27.91 |
Bra014721.1-P | Field mustard | cytosol, mitochondrion | 47.02 | 25.4 |
Protein Annotations
EMBL:ACUP02001266 | EnsemblPlants:KRH73124 | EnsemblPlantsGene:GLYMA_02G253700 | EntrezGene:100818168 | Gene3D:2.10.110.10 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF28 |
PFAM:PF00412 | PFscan:PS50023 | ProteinID:KRH73124 | ProteinID:KRH73124.1 | SMART:SM00132 | SUPFAM:SSF57716 |
UniParc:UPI0006EDFA96 | UniProt:A0A0R0LB42 | MapMan:15.5.41 | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:44084898..44087376
Molecular Weight (calculated)
18799.8 Da
IEP (calculated)
9.962
GRAVY (calculated)
-0.283
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSVSESLF TTSPICHFSL FYQQVVGLVH LDQKARDMSF IGTQQKCKAC GKTVYPVDQL SAYHKACFKC SHCEGTLKLS NYSSMESVLY CKPHNEQLFK
101: ETGSFKKNFQ SPSKQADKTT PELTRSPSKA ASMFSGTKKS VLHVAKLLIR WRRPITNLVS NVHMAAVP
101: ETGSFKKNFQ SPSKQADKTT PELTRSPSKA ASMFSGTKKS VLHVAKLLIR WRRPITNLVS NVHMAAVP
001: MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
101: FSGTQEKCAT CSKTVYPIEK VTVESQTYHK SCFKCSHGGC PISPSNYAAL EGILYCKHHF AQLFKEKGSY NHLIKSASIK RSAAAAVAAG VPAASVPES
Arabidopsis Description
GATA type zinc finger transcription factor family protein [Source:TAIR;Acc:AT3G55770]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.