Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95125 | Sorghum | cytosol | 90.31 | 89.85 |
| Zm00001d028550_P001 | Maize | extracellular, mitochondrion | 90.31 | 89.39 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 86.73 | 83.33 |
| TraesCS4D01G213600.1 | Wheat | cytosol | 86.22 | 82.84 |
| VIT_13s0019g03280.t01 | Wine grape | cytosol | 78.57 | 81.48 |
| GSMUA_Achr6P14980_001 | Banana | cytosol | 77.55 | 80.0 |
| GSMUA_Achr10P... | Banana | cytosol | 77.04 | 79.47 |
| KRH15005 | Soybean | cytosol | 76.02 | 78.84 |
| KRG97787 | Soybean | cytosol | 76.53 | 75.76 |
| Bra005003.1-P | Field mustard | cytosol | 76.53 | 75.38 |
| Solyc05g052780.2.1 | Tomato | cytosol | 72.45 | 75.13 |
| PGSC0003DMT400069763 | Potato | cytosol | 72.45 | 75.13 |
| CDY20498 | Canola | cytosol | 76.53 | 75.0 |
| CDX74822 | Canola | cytosol | 76.53 | 75.0 |
| CDY60999 | Canola | cytosol | 76.02 | 74.5 |
| KRH31081 | Soybean | cytosol | 76.02 | 74.5 |
| CDY27267 | Canola | cytosol | 72.96 | 71.14 |
| CDX72203 | Canola | cytosol | 72.96 | 71.14 |
| Bra007189.1-P | Field mustard | cytosol | 72.45 | 70.65 |
| AT2G39900.1 | Thale cress | cytosol | 70.92 | 69.5 |
| AT3G55770.7 | Thale cress | cytosol | 73.47 | 61.8 |
| Os04t0532500-01 | Rice | plasma membrane | 59.69 | 58.21 |
| CDY02959 | Canola | mitochondrion | 73.47 | 53.53 |
| CDX76073 | Canola | mitochondrion | 73.47 | 53.33 |
| Os12t0510900-01 | Rice | cytosol | 26.53 | 51.49 |
| Os02t0641000-00 | Rice | mitochondrion | 38.27 | 48.7 |
| Bra014721.1-P | Field mustard | cytosol, mitochondrion | 73.47 | 46.3 |
| KRH73124 | Soybean | cytosol | 37.24 | 43.45 |
| Os06t0237300-01 | Rice | plasma membrane | 50.0 | 7.52 |
| Os06t0237200-00 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.41 | Gene3D:2.10.110.10 | EntrezGene:4332355 | ProteinID:AAP06876.1 | ProteinID:ABF95147.1 | EMBL:AK058507 |
| ProteinID:BAF11569.1 | ProteinID:BAS83412.1 | ProteinID:EAZ26370.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001781 | EMBL:JN974463 | EnsemblPlantsGene:Os03g0266100 | EnsemblPlants:Os03t0266100-01 | PFAM:PF00412 | ScanProsite:PS00478 |
| PFscan:PS50023 | PANTHER:PTHR24206 | PANTHER:PTHR24206:SF52 | UniProt:Q84Q79 | SMART:SM00132 | SUPFAM:SSF57716 |
| UniParc:UPI000018DC0F | RefSeq:XP_015630472.1 | InterPro:Znf_LIM | SEG:seg | : | : |
Description
Zinc finger, LIM-type domain containing protein. (Os03t0266100-01)
Coordinates
chr3:+:8797898..8799782
Molecular Weight (calculated)
21502.6 Da
IEP (calculated)
8.932
GRAVY (calculated)
-0.499
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSGTQQKCK VCTKTVYPMD QLSTDGVVFH RSCFKCQHCK STLSLGNYSS IEGVPYCKPH FEQLFKETGS YNKSFQSPAK PASEKLTPEL TRSPSKAARM
101: FSGTQEKCAT CSKTAYPLEK VTVEGQAYHK SCFKCSHGGC AISPSNYAAL EGILYCKHHF SQLFKEKGSY NHLIKCASVK RAEAQPAPPP AAADSS
101: FSGTQEKCAT CSKTAYPLEK VTVEGQAYHK SCFKCSHGGC AISPSNYAAL EGILYCKHHF SQLFKEKGSY NHLIKCASVK RAEAQPAPPP AAADSS
001: MSFTGTQQKC RACEKTVYPV ELLSADGISY HKACFKCSHC KSRLQLSNYS SMEGVVYCRP HFEQLFKESG SFSKNFQSPA KPLTDKPTPE LNRTPSRLAG
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
101: MFSGTQDKCA TCTKTVYPIE KVTVESQCYH KSCFKCSHGG CPISPSNYAA LEGILYCKHH FAQLFKEKGS YNHLIKSASI KRATAAATAA AAAVAAVPES
Arabidopsis Description
WLIN2AWLIM2a [Source:UniProtKB/TrEMBL;Acc:A0A178VU35]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.