Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0510900-01 | Rice | cytosol | 4.37 | 56.44 |
| Os03t0266100-01 | Rice | plasma membrane | 7.52 | 50.0 |
| Os04t0532500-01 | Rice | plasma membrane | 6.98 | 45.27 |
| Os02t0641000-00 | Rice | mitochondrion | 4.91 | 41.56 |
| Os06t0237200-00 | Rice | nucleus | 0.54 | 1.3 |
Protein Annotations
| MapMan:15.5.41 | Gene3D:2.10.110.10 | EntrezGene:4340605 | ProteinID:BAD37892.1 | ProteinID:BAF19162.1 | ProteinID:BAS96966.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003887 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | GO:GO:0034061 | GO:GO:0046872 | GO:GO:0071897 | InterPro:IPR001781 |
| EnsemblPlantsGene:Os06g0237300 | EnsemblPlants:Os06t0237300-01 | PFAM:PF00412 | ScanProsite:PS00478 | PFscan:PS50023 | UniProt:Q67VC7 |
| SMART:SM00132 | SUPFAM:SSF57716 | UniParc:UPI00004263ED | RefSeq:XP_015643465.1 | InterPro:Znf_LIM | SEG:seg |
Description
Similar to LIM domain protein WLIM-1. (Os06t0237300-01)
Coordinates
chr6:-:7133968..7140003
Molecular Weight (calculated)
140457.0 Da
IEP (calculated)
4.253
GRAVY (calculated)
-1.065
Length
1303 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAAAWGGTT QKCDSCGRTV YPVEELAADG RVYHRPCFRC THCKATLQFS NYSSVEGVLY CKPHYDQILK STGSLEKSFE GTSKSAKAEK SNGNKGQPNR
0101: FSSMFVGTQD KCVVCNKTVY PLEKVNLNGS SYHKSCFRCT HGGCTLSPSN NVTHEGKLYC KTHHSQLFMV KGNFSNFEDS TPNAKVDIEK QPEHEDATKN
0201: PGGPGQGDGL TEKPLESELT PEKPSQDDIV AEKQSQSSVD VPKQSESSTT VQRSEEGERV TKGESNSHVV SKKPLESSVE KPFQSSAVNL QPSGSSAAVR
0301: KPWQRNLPTD KPLLSNTTTE KSTPSSAAIE ESLPSNGVDA KQPESSTAST VVKRPWQRRV ATENLPQSIS PSDKPSSTSA DDVKPSENSK LIRKPWQRAV
0401: AAEAQIQNSG PTEKSSLTND TKPSESTTSI KRPWEHKVVN EKPLQNNIDT EKPLQNNTDT EKSSSSAIDV KLAETSTTPT VPQEHSGITE KPSQTSADDV
0501: KPSESTAAVV KKQWQRNIGF QKQPQSSVTD AKTPESRGMG KRLWQRNVPT EKQSQSGASV VTPSQVSVAS TNPLQSSVVV KKPWQRSVSR EKEPEKDISS
0601: NKPLQNRVLA EEAEKTNVTA DNKSQIIQDK KNNGATTENS SQISESAKKL PLTANKSQAD TSTEKLSESD ILAVASSQIT EPSKKPSENT AENEKPSQTD
0701: IATDELPLTQ SVEAMSEPSP SDAAHQEISE REILTDKLPE STMAVEKLSQ TATLTEKPSK EDAAEKLPQT NEPSEQPHES EETAEKPLQN EANAESTTKQ
0801: SDLSLEKPPQ VDANVGNPTE PESDATSGVN SSDAQIRPTA EQLVGPQGIV SAEKTSDQIL EANTDPAADQ SSESQDVAPA KVATEQPLEN QKAAASEQPL
0901: EPQHEAYEEN PQEHNSDATA KESSEPERDT ASDQLAEQPS ESRTAGEKAT LRESDVVTED PAEPQIDAAA ERSAEVLSES QTGVETPVLH QSDRTNEVPS
1001: EPQTDEASDK STEQPLEPEN DASVEDEKPP EIESDDVHDK PSESTPDTET LPHNTPKSSI SISEAADGNV SEEAPPQSSA SIETPSESAI AVEEPKHDDE
1101: ASIKPSEDSS ALEEPPQDDS ASVEPSENTI TLEKASEEDE GSVKPSEGND ALEKTLEEDE ASAKLPEDST TFEKPSEKDD AGTKQTEDPV TLEKEPEEDK
1201: GSVEPTQDNA GLEKPLEEDE ASAKPSEDSV VLDKPSVEDD DSAKPSEDSM DLEKPEAHKP SEEEDGATKS SPEDAAVEEA PLQGDTETAT DKPSLEADTT
1301: ETA
0101: FSSMFVGTQD KCVVCNKTVY PLEKVNLNGS SYHKSCFRCT HGGCTLSPSN NVTHEGKLYC KTHHSQLFMV KGNFSNFEDS TPNAKVDIEK QPEHEDATKN
0201: PGGPGQGDGL TEKPLESELT PEKPSQDDIV AEKQSQSSVD VPKQSESSTT VQRSEEGERV TKGESNSHVV SKKPLESSVE KPFQSSAVNL QPSGSSAAVR
0301: KPWQRNLPTD KPLLSNTTTE KSTPSSAAIE ESLPSNGVDA KQPESSTAST VVKRPWQRRV ATENLPQSIS PSDKPSSTSA DDVKPSENSK LIRKPWQRAV
0401: AAEAQIQNSG PTEKSSLTND TKPSESTTSI KRPWEHKVVN EKPLQNNIDT EKPLQNNTDT EKSSSSAIDV KLAETSTTPT VPQEHSGITE KPSQTSADDV
0501: KPSESTAAVV KKQWQRNIGF QKQPQSSVTD AKTPESRGMG KRLWQRNVPT EKQSQSGASV VTPSQVSVAS TNPLQSSVVV KKPWQRSVSR EKEPEKDISS
0601: NKPLQNRVLA EEAEKTNVTA DNKSQIIQDK KNNGATTENS SQISESAKKL PLTANKSQAD TSTEKLSESD ILAVASSQIT EPSKKPSENT AENEKPSQTD
0701: IATDELPLTQ SVEAMSEPSP SDAAHQEISE REILTDKLPE STMAVEKLSQ TATLTEKPSK EDAAEKLPQT NEPSEQPHES EETAEKPLQN EANAESTTKQ
0801: SDLSLEKPPQ VDANVGNPTE PESDATSGVN SSDAQIRPTA EQLVGPQGIV SAEKTSDQIL EANTDPAADQ SSESQDVAPA KVATEQPLEN QKAAASEQPL
0901: EPQHEAYEEN PQEHNSDATA KESSEPERDT ASDQLAEQPS ESRTAGEKAT LRESDVVTED PAEPQIDAAA ERSAEVLSES QTGVETPVLH QSDRTNEVPS
1001: EPQTDEASDK STEQPLEPEN DASVEDEKPP EIESDDVHDK PSESTPDTET LPHNTPKSSI SISEAADGNV SEEAPPQSSA SIETPSESAI AVEEPKHDDE
1101: ASIKPSEDSS ALEEPPQDDS ASVEPSENTI TLEKASEEDE GSVKPSEGND ALEKTLEEDE ASAKLPEDST TFEKPSEKDD AGTKQTEDPV TLEKEPEEDK
1201: GSVEPTQDNA GLEKPLEEDE ASAKPSEDSV VLDKPSVEDD DSAKPSEDSM DLEKPEAHKP SEEEDGATKS SPEDAAVEEA PLQGDTETAT DKPSLEADTT
1301: ETA
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.