Factsheet for Os04t0532500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12556	Sorghum	cytosol	91.04	90.15
Zm00001d002844_P003	Maize	cytosol	89.05	86.89
TraesCS2A01G370800.1	Wheat	cytosol	85.07	84.24
TraesCS2B01G388000.1	Wheat	cytosol	86.07	83.98
Zm00001d025926_P001	Maize	cytosol	85.57	83.9
TraesCS2D01G367100.1	Wheat	cytosol	85.57	83.9
GSMUA_Achr1P03020_001	Banana	cytosol	66.67	75.28
GSMUA_Achr4P29420_001	Banana	cytosol	71.64	71.64
GSMUA_Achr2P11440_001	Banana	cytosol	68.16	68.5
GSMUA_Achr2P18580_001	Banana	cytosol	62.69	67.74
GSMUA_Achr5P20680_001	Banana	cytosol	67.16	67.16
GSMUA_Achr11P...	Banana	cytosol	66.67	67.0
Os03t0266100-01	Rice	plasma membrane	58.21	59.69
Os02t0641000-00	Rice	mitochondrion	44.28	57.79
VIT_02s0025g03980.t01	Wine grape	cytosol	60.7	56.74
PGSC0003DMT400014797	Potato	cytosol	45.77	54.76
Solyc08g080740.2.1	Tomato	cytosol	51.74	53.61
Solyc08g007940.2.1	Tomato	cytosol	54.73	53.4
KRH59846	Soybean	cytosol	58.21	52.23
KRH41147	Soybean	cytosol	57.21	50.44
Os12t0510900-01	Rice	cytosol	22.89	45.54
HORVU5Hr1G031550.3	Barley	cytosol	22.39	45.45
PGSC0003DMT400007915	Potato	cytosol	47.76	43.05
Os06t0237300-01	Rice	plasma membrane	45.27	6.98
Os06t0237200-00	Rice	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.41	Gene3D:2.10.110.10	EntrezGene:4336498	EMBL:AK069907	ProteinID:BAF15319.1	ProteinID:BAS90226.1
ProteinID:CAE04568.1	ProteinID:CAE54551.1	ProteinID:EAZ31441.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046872	InterPro:IPR001781	EnsemblPlantsGene:Os04g0532500	EnsemblPlants:Os04t0532500-01	PFAM:PF00412	ScanProsite:PS00478
PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF30	UniProt:Q7F9R9	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI00001B1A01	RefSeq:XP_015635606.1	InterPro:Znf_LIM	SEG:seg	:	:

Description

PLIM2BSimilar to Transcription factor L2. (Os04t0532500-01)

Coordinates

chr4:-:26621017..26622583

Molecular Weight (calculated)

22292.5 Da

IEP (calculated)

7.557

GRAVY (calculated)

-0.458

Length

201 amino acids

Sequence
(BLAST)

001: MSFTGTQDKC TACDKTVHFI DLLTADGVPY HKTCFKCSHC KGILSMCSYS SMDGVLYCKT HFEQLFKETG SFSKKFAPGC RSTDKELARA PSKICSAFSG
101: TQDKCAACQK TVYPLEKLTL EGESYHKSCF KCSHGGCILT TSSYAALNGV LYCKIHFGQL FMEKGSYNHM KKKSESQEVL PEVVPEEQPA PPPPDENRED
201: N

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.