Factsheet for Zm00001d025926_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002844_P003	Maize	cytosol	91.71	91.26
EES12556	Sorghum	cytosol	88.78	89.66
TraesCS2A01G370800.1	Wheat	cytosol	84.88	85.71
Os04t0532500-01	Rice	plasma membrane	83.9	85.57
TraesCS2D01G367100.1	Wheat	cytosol	85.37	85.37
TraesCS2B01G388000.1	Wheat	cytosol	84.88	84.47
GSMUA_Achr1P03020_001	Banana	cytosol	63.9	73.6
Zm00001d051262_P001	Maize	cytosol	72.68	71.98
GSMUA_Achr4P29420_001	Banana	cytosol	69.27	70.65
GSMUA_Achr11P...	Banana	cytosol	67.32	69.0
GSMUA_Achr2P18580_001	Banana	cytosol	61.95	68.28
GSMUA_Achr5P20680_001	Banana	cytosol	65.37	66.67
GSMUA_Achr2P11440_001	Banana	cytosol	64.88	66.5
Zm00001d017382_P001	Maize	cytosol	75.12	62.35
VIT_02s0025g03980.t01	Wine grape	cytosol	61.46	58.6
Zm00001d028550_P001	Maize	extracellular, mitochondrion	56.59	58.59
PGSC0003DMT400014797	Potato	cytosol	45.37	55.36
Solyc08g007940.2.1	Tomato	cytosol	54.15	53.88
Solyc08g080740.2.1	Tomato	cytosol	49.76	52.58
KRH59846	Soybean	cytosol	56.59	51.79
KRH41147	Soybean	cytosol	55.61	50.0
Zm00001d041725_P001	Maize	cytosol	45.85	47.96
Zm00001d035304_P001	Maize	mitochondrion	45.37	47.69
HORVU5Hr1G031550.3	Barley	cytosol	21.46	44.44
PGSC0003DMT400007915	Potato	cytosol	46.34	42.6
Zm00001d037252_P002	Maize	cytosol	45.37	6.4

Protein Annotations

EntrezGene:100272616	MapMan:15.5.41	Gene3D:2.10.110.10	ProteinID:AQK45040.1	UniProt:B4FPL8	EMBL:BT039056
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	EMBL:KJ727652	PFAM:PF00412
ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24206	PANTHER:PTHR24206:SF30	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI00017B8232	EnsemblPlantsGene:Zm00001d025926	EnsemblPlants:Zm00001d025926_P001	EnsemblPlants:Zm00001d025926_T001	InterPro:Znf_LIM	SEG:seg

Description

LIM-transcription factor 14LIM domain-containing protein PLIM2b

Coordinates

chr10:-:133898724..133900553

Molecular Weight (calculated)

22407.4 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.486

Length

205 amino acids

Sequence
(BLAST)

001: MSSFTGTQDK CAECDKTVHF IDLLTADGVT YHKTCFKCSH CKGILSMCSY SSMDGVLYCK THFEQLFKET GSFSKNFTPG GKSSDKGELT RAPSKLSSAF
101: SGTQDKCAAC QKTVYPLEKL TLEGESYHKS CFKCSHGGCI LTTSSYAALN GVLYCKIHFA QLFMEKGSYS HMMKKSPSQD TLPDMAADEQ PPEPAPPQDG
201: EGEDN

Best Arabidopsis Sequence Match ( AT3G61230.1 )
(BLAST)

001: MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF
101: SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE
201: EETSDAAAEE HES

Arabidopsis Description

PLIM2CLIM domain-containing protein PLIM2c [Source:UniProtKB/Swiss-Prot;Acc:Q500W4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.