Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G367100.1 | Wheat | cytosol | 99.51 | 98.54 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 98.52 | 97.09 |
| EES12556 | Sorghum | cytosol | 88.67 | 88.67 |
| Zm00001d002844_P003 | Maize | cytosol | 86.7 | 85.44 |
| Os04t0532500-01 | Rice | plasma membrane | 84.24 | 85.07 |
| Zm00001d025926_P001 | Maize | cytosol | 85.71 | 84.88 |
| GSMUA_Achr1P03020_001 | Banana | cytosol | 65.02 | 74.16 |
| TraesCS6A01G236600.1 | Wheat | cytosol | 75.37 | 72.17 |
| GSMUA_Achr4P29420_001 | Banana | cytosol | 70.44 | 71.14 |
| GSMUA_Achr2P18580_001 | Banana | cytosol | 64.04 | 69.89 |
| GSMUA_Achr11P... | Banana | cytosol | 66.5 | 67.5 |
| GSMUA_Achr5P20680_001 | Banana | cytosol | 66.5 | 67.16 |
| GSMUA_Achr2P11440_001 | Banana | cytosol | 66.01 | 67.0 |
| TraesCS1A01G173600.1 | Wheat | cytosol | 65.02 | 66.0 |
| VIT_02s0025g03980.t01 | Wine grape | cytosol | 61.58 | 58.14 |
| PGSC0003DMT400014797 | Potato | cytosol | 44.34 | 53.57 |
| Solyc08g080740.2.1 | Tomato | cytosol | 50.74 | 53.09 |
| Solyc08g007940.2.1 | Tomato | cytosol | 53.69 | 52.91 |
| KRH59846 | Soybean | cytosol | 57.14 | 51.79 |
| KRH41147 | Soybean | cytosol | 56.16 | 50.0 |
| HORVU5Hr1G031550.3 | Barley | cytosol | 23.65 | 48.48 |
| PGSC0003DMT400007915 | Potato | cytosol | 46.31 | 42.15 |
| TraesCS5A01G103100.2 | Wheat | cytosol | 45.81 | 39.57 |
| TraesCS7A01G193500.2 | Wheat | cytosol | 45.32 | 7.26 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G370800.1 | EnsemblPlantsGene:TraesCS2A01G370800 | Gene3D:2.10.110.10 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 |
| PANTHER:PTHR24206:SF30 | PFAM:PF00412 | PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 |
| SUPFAM:SSF57716 | TIGR:cd09440 | MapMan:15.5.41 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:613439936..613441023
Molecular Weight (calculated)
22329.6 Da
IEP (calculated)
7.602
GRAVY (calculated)
-0.330
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTGTQDKC FACEKTVHFI DLLTADGVIY HKTCFKCSHC KGILSMCSYS SMDGVLYCKT HFEQLFKETG SFSKKFTPGN KSGDKNELSR VPSKLSAAFS
101: GTQDKCAACT KTVYPLEKMT LEGDAYHKSC FKCSHGGCIL TTSSYAALNG VLYCKIHFQQ LFMEKGSYSH MKKKSPSQEV LPDLVAAAEE QPAAEAAPPQ
201: DEE
101: GTQDKCAACT KTVYPLEKMT LEGDAYHKSC FKCSHGGCIL TTSSYAALNG VLYCKIHFQQ LFMEKGSYSH MKKKSPSQEV LPDLVAAAEE QPAAEAAPPQ
201: DEE
001: MSFTGTLDKC KACDKTVYVM DLLTLEGNTY HKSCFRCTHC KGTLVISNYS SMDGVLYCKP HFEQLFKESG NYSKNFQAGK TEKPNDHLTR TPSKLSSFFS
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES
101: GTQDKCATCK KTVYPLEKVT MEGESYHKTC FRCTHSGCPL THSSYASLNG VLYCKVHFNQ LFLEKGSYNH VHQAAANHRR SASSGGASPP SDDHKPDDTA
201: SIPEAKEDDA APEAAGEEEP EPVVES
Arabidopsis Description
PLIM2ALIM domain-containing protein PLIM2a [Source:UniProtKB/Swiss-Prot;Acc:O80839]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.