Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G098800.3 | Wheat | cytosol | 90.38 | 91.31 |
| TraesCS7D01G194800.1 | Wheat | cytosol | 86.99 | 86.24 |
| HORVU7Hr1G039480.4 | Barley | cytosol, endoplasmic reticulum | 81.94 | 80.73 |
| GSMUA_Achr9P18250_001 | Banana | cytosol | 10.17 | 62.62 |
| GSMUA_Achr8P25860_001 | Banana | cytosol | 9.62 | 60.4 |
| EER89500 | Sorghum | cytosol | 54.02 | 46.44 |
| Zm00001d037252_P002 | Maize | cytosol | 52.76 | 46.04 |
| TraesCS5A01G103100.2 | Wheat | cytosol | 8.44 | 45.53 |
| TraesCS2A01G370800.1 | Wheat | cytosol | 7.26 | 45.32 |
| TraesCS6A01G236600.1 | Wheat | cytosol | 7.41 | 44.34 |
| TraesCS1A01G173600.1 | Wheat | cytosol | 6.7 | 42.5 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G193500.2 | EnsemblPlantsGene:TraesCS7A01G193500 | Gene3D:2.10.110.10 | InterPro:IPR001781 | InterPro:Znf_LIM | PFAM:PF00412 |
| PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 | SUPFAM:SSF57716 | TIGR:cd09440 |
| TIGR:cd09441 | MapMan:15.5.41 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:150994242..150999951
Molecular Weight (calculated)
136741.0 Da
IEP (calculated)
4.284
GRAVY (calculated)
-1.027
Length
1268 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAAWGGTTQ KCASCGKKVY PVEELAADGR AYHRPCFRCH HCKSTLQFSN YSSIEGVLYC KPHYDQILKS TGSLEKSFEG VTRSAKSEKS NGPKGQQNSR
0101: FSSMFVGTQD KCVVCNKTVY PLEKVDLNGG AYHKSCFRCT HGGCTLSPSN NVTHEGKLYC KTHHSQLFMV KGNFSQFEEN TVNAKVAVEK LPETGEATNK
0201: PGQGDEIGEK TSENELTADK PSQNDVAAEN PLQSSIDVPK PSESTVEKSA ESESVTESES KSPVVNNKPF ESSAEKPHQS SVVDTKPSGS SAAIRKPWQR
0301: SLPTNKPSVI SASTEKPSPS DAAIEKPSSS NGSNGKPSDS STGVKKSWQH SVATENPQQS MLPSDKPAST SADDVKPSES GKVVKKTWQR PVVAENQKQN
0401: SGPTEKPSPT SDTKPLDRST TIKRPWGRRI ASEKSLQSSE VDMKPVETST VVTVLQQPSE EPPQTDAAVL QQPSEEPQQT NAAVLQQPSE EPQQTNADDV
0501: KPSEDTAVVV KKPWQFNTRT EKQPQSSVVD AKKTESTGAI KRQWKRNTPF EKPSQSSAAA AVTTTQSNVT VTKPAPSNMA VKKSWQRSTT PKNLAASDMA
0601: TNKALQTKAV IEKPSQESSQ EKPLQEKTPQ VTVITKKRSE ESSQEKPSQE KAPQTAAIIE KPSQESSQEK PSEAKTPQIA ATAEKPSQGS SQEKAPRKAS
0701: ITGKPSQESS QEKPLQMNES SKEQLQTEDI VEKQLQSEDI ADATPQRDLM TQDDVSLKKI PEPQIDASSA ELTKDPSEQD GAASGENLSE SQSKLTVEQT
0801: LESQDAVVPQ EATDQIMESK NDAGIEQSSE SQSVAPAEVP VEQPLQQQKD ASTEQPLESQ HEADDKDQTE PSSDAIAEES LQLQFDTAAV KLSEPQTDAT
0901: ADQSAEQLPE PQSDASVEEP VVHQSNVSTE KLSESQGDAA AVESSGQPSE PEERSERQMD AAPHNLTDQP LEPQKDVSIE KPLETETNVV TDNPSESSLA
1001: TETLPESTPK ISTATEEPAQ REISDETLPQ SIALDTTPES ATSVEEPTYV GEAIVEISED SSAPEKPSED AVTPEKPSDE GDVGVEPAED NAALKNPSEE
1101: DEVSAEPSNN TVDLEKPSEE KDDAMKPVED SVALEKPTAD KPSEEDKVGA EPSDERVDLD KPSEDSMAVE EPVTDKPSVE DEASAEPSND RTDIEKPSEE
1201: KEDATVKSSE DITSLEKPVT DKPSEEEEEG AASEKPSHDD AVIEAPSHDD MDSATDKPSP ATETNTSA
0101: FSSMFVGTQD KCVVCNKTVY PLEKVDLNGG AYHKSCFRCT HGGCTLSPSN NVTHEGKLYC KTHHSQLFMV KGNFSQFEEN TVNAKVAVEK LPETGEATNK
0201: PGQGDEIGEK TSENELTADK PSQNDVAAEN PLQSSIDVPK PSESTVEKSA ESESVTESES KSPVVNNKPF ESSAEKPHQS SVVDTKPSGS SAAIRKPWQR
0301: SLPTNKPSVI SASTEKPSPS DAAIEKPSSS NGSNGKPSDS STGVKKSWQH SVATENPQQS MLPSDKPAST SADDVKPSES GKVVKKTWQR PVVAENQKQN
0401: SGPTEKPSPT SDTKPLDRST TIKRPWGRRI ASEKSLQSSE VDMKPVETST VVTVLQQPSE EPPQTDAAVL QQPSEEPQQT NAAVLQQPSE EPQQTNADDV
0501: KPSEDTAVVV KKPWQFNTRT EKQPQSSVVD AKKTESTGAI KRQWKRNTPF EKPSQSSAAA AVTTTQSNVT VTKPAPSNMA VKKSWQRSTT PKNLAASDMA
0601: TNKALQTKAV IEKPSQESSQ EKPLQEKTPQ VTVITKKRSE ESSQEKPSQE KAPQTAAIIE KPSQESSQEK PSEAKTPQIA ATAEKPSQGS SQEKAPRKAS
0701: ITGKPSQESS QEKPLQMNES SKEQLQTEDI VEKQLQSEDI ADATPQRDLM TQDDVSLKKI PEPQIDASSA ELTKDPSEQD GAASGENLSE SQSKLTVEQT
0801: LESQDAVVPQ EATDQIMESK NDAGIEQSSE SQSVAPAEVP VEQPLQQQKD ASTEQPLESQ HEADDKDQTE PSSDAIAEES LQLQFDTAAV KLSEPQTDAT
0901: ADQSAEQLPE PQSDASVEEP VVHQSNVSTE KLSESQGDAA AVESSGQPSE PEERSERQMD AAPHNLTDQP LEPQKDVSIE KPLETETNVV TDNPSESSLA
1001: TETLPESTPK ISTATEEPAQ REISDETLPQ SIALDTTPES ATSVEEPTYV GEAIVEISED SSAPEKPSED AVTPEKPSDE GDVGVEPAED NAALKNPSEE
1101: DEVSAEPSNN TVDLEKPSEE KDDAMKPVED SVALEKPTAD KPSEEDKVGA EPSDERVDLD KPSEDSMAVE EPVTDKPSVE DEASAEPSND RTDIEKPSEE
1201: KEDATVKSSE DITSLEKPVT DKPSEEEEEG AASEKPSHDD AVIEAPSHDD MDSATDKPSP ATETNTSA
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.