Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G193500.2 | Wheat | cytosol | 91.31 | 90.38 |
| TraesCS7D01G194800.1 | Wheat | cytosol | 86.85 | 85.22 |
| HORVU7Hr1G039480.4 | Barley | cytosol, endoplasmic reticulum | 80.96 | 78.94 |
| GSMUA_Achr9P18250_001 | Banana | cytosol | 10.36 | 63.11 |
| GSMUA_Achr8P25860_001 | Banana | cytosol | 9.8 | 60.89 |
| TraesCS5B01G107400.1 | Wheat | cytosol | 8.53 | 54.59 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 7.89 | 48.53 |
| EER89500 | Sorghum | cytosol | 53.47 | 45.49 |
| Zm00001d037252_P002 | Maize | cytosol | 52.35 | 45.22 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 7.41 | 44.93 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 7.25 | 44.17 |
| TraesCS1B01G190800.1 | Wheat | cytosol | 6.93 | 41.83 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G098800.3 | EnsemblPlantsGene:TraesCS7B01G098800 | Gene3D:2.10.110.10 | InterPro:IPR001781 | InterPro:Znf_LIM | ncoils:Coil |
| PFAM:PF00412 | PFscan:PS50023 | ScanProsite:PS00478 | SEG:seg | SMART:SM00132 | SUPFAM:SSF57716 |
| TIGR:cd09440 | TIGR:cd09441 | MapMan:15.5.41 | : | : | : |
Description
No Description!
Coordinates
chr7B:-:113202750..113209315
Molecular Weight (calculated)
135209.0 Da
IEP (calculated)
4.280
GRAVY (calculated)
-1.027
Length
1255 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAAWGGTTQ KCASCGKKVY PVEELAADGR AYHRPCFRCH HCKSTLQFSN YSSIEGVLYC KPHYDQILKS TGSLEKSFEG VTRSAKSEKS NGPKGQQNSR
0101: FSSMFVGTQD KCVVCNKTVY PLEKVDLNGG SYHKSCFRCT HGGCTLSPSN NVTHEGKLYC KTHHSQLFMV KGNFSQFEEN TVNAKVAVEK QPETGEATDK
0201: PGQGDEVSEK TTENELTTDE PSQNDVAAEK QLQSSIDVAK PSESTVEKSA ESESVTESES KSPGVNNKPS ESSAEKPLQS SVVDTKPPGS SAAIRKPWQR
0301: SLPTNKPSVI SASTEKPSPS DAAIEKPSSS NGTNGKPSDS STGVKKSWQR SVATENPQQS MLPSDKPAST SADNVKPSES GKVAKKTWQR PVVAENQKQN
0401: SGPTEKPSPT SDTKPLDSST AIKRPWGRRI ASEKSLQSSE VDMKPVETST VVTVLQQPSE EPLQTNAAVL QQPSEEPQQT NAAVLKQPSE EPQQTNADDV
0501: KPSEDTGAVV KKPWQFNTRT EKQPQSSVVD AKKTESTGAI KRQWKRNTPF EKPSQSSAAA AVTTTQSNVT VTKPAPSNMA VKKSWQRSTT PKNLAASDMA
0601: TNKALQTKAV IEKPSQESSQ EKPLQEKAPQ ITVITEKLSE ETSQEKPSQE KAPQTAAIIE KPSQESSQEK PSKAKTPQIA ATAEKPSQES SQEKALQMNE
0701: SSKEQLQTEE TIEKQLQSED IADATPQRDL MTQDDVSLKK IPEPEIDASS DKPTKDPSEQ EGAASGENLS ESQSKLTVEQ TLESQDAVVP REATDQIMEA
0801: KNDAGIERSS ESQSVAPAEV PVEQPLQQQK DASTEQALES QHEADDKDQT EPSSDAIAKE SLQLEFDTAA VKSSEPQTDA AADQSAEQLP EPQSDASVEE
0901: PVVHQGDVST EKLSESQGDA AAVESSGQPS EPEKSSEPQM DAAPHNLTDQ PLEPQKDVSI EKPLETETNV VADNPSESSL ATESTLKIST TTEEPAQREI
1001: SDETLPQSIA LDTTPESTTS VEEPTDVGEA IVEISEDSSA PEKPSEDAVT PEEPSDVGKT TLEPAGDNAA VEKPSEEVEV GTDPSNNLVD LEKPSEKEDD
1101: SVKPVEDSVA LEKPTTDKPW EEDKVSAEPS NDRVDLDKPS EKEADTVKPS EDSMALEEPV TDKPSEEDEA SAEPSNDRID AEKPSEEKEE DTVKSSEDST
1201: AVEKPATDKP SEEEGEGAAS EKPSHDDAVI EAPSHEDMDS ATDKPLPATE KNISP
0101: FSSMFVGTQD KCVVCNKTVY PLEKVDLNGG SYHKSCFRCT HGGCTLSPSN NVTHEGKLYC KTHHSQLFMV KGNFSQFEEN TVNAKVAVEK QPETGEATDK
0201: PGQGDEVSEK TTENELTTDE PSQNDVAAEK QLQSSIDVAK PSESTVEKSA ESESVTESES KSPGVNNKPS ESSAEKPLQS SVVDTKPPGS SAAIRKPWQR
0301: SLPTNKPSVI SASTEKPSPS DAAIEKPSSS NGTNGKPSDS STGVKKSWQR SVATENPQQS MLPSDKPAST SADNVKPSES GKVAKKTWQR PVVAENQKQN
0401: SGPTEKPSPT SDTKPLDSST AIKRPWGRRI ASEKSLQSSE VDMKPVETST VVTVLQQPSE EPLQTNAAVL QQPSEEPQQT NAAVLKQPSE EPQQTNADDV
0501: KPSEDTGAVV KKPWQFNTRT EKQPQSSVVD AKKTESTGAI KRQWKRNTPF EKPSQSSAAA AVTTTQSNVT VTKPAPSNMA VKKSWQRSTT PKNLAASDMA
0601: TNKALQTKAV IEKPSQESSQ EKPLQEKAPQ ITVITEKLSE ETSQEKPSQE KAPQTAAIIE KPSQESSQEK PSKAKTPQIA ATAEKPSQES SQEKALQMNE
0701: SSKEQLQTEE TIEKQLQSED IADATPQRDL MTQDDVSLKK IPEPEIDASS DKPTKDPSEQ EGAASGENLS ESQSKLTVEQ TLESQDAVVP REATDQIMEA
0801: KNDAGIERSS ESQSVAPAEV PVEQPLQQQK DASTEQALES QHEADDKDQT EPSSDAIAKE SLQLEFDTAA VKSSEPQTDA AADQSAEQLP EPQSDASVEE
0901: PVVHQGDVST EKLSESQGDA AAVESSGQPS EPEKSSEPQM DAAPHNLTDQ PLEPQKDVSI EKPLETETNV VADNPSESSL ATESTLKIST TTEEPAQREI
1001: SDETLPQSIA LDTTPESTTS VEEPTDVGEA IVEISEDSSA PEKPSEDAVT PEEPSDVGKT TLEPAGDNAA VEKPSEEVEV GTDPSNNLVD LEKPSEKEDD
1101: SVKPVEDSVA LEKPTTDKPW EEDKVSAEPS NDRVDLDKPS EKEADTVKPS EDSMALEEPV TDKPSEEDEA SAEPSNDRID AEKPSEEKEE DTVKSSEDST
1201: AVEKPATDKP SEEEGEGAAS EKPSHDDAVI EAPSHEDMDS ATDKPLPATE KNISP
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.