Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G115000.1 | Wheat | cytosol | 99.49 | 99.49 |
| HORVU5Hr1G028180.1 | Barley | cytosol | 98.98 | 98.98 |
| EES16055 | Sorghum | cytosol | 93.37 | 94.33 |
| Zm00001d041725_P001 | Maize | cytosol | 92.86 | 92.86 |
| Zm00001d035304_P001 | Maize | mitochondrion | 92.35 | 92.82 |
| Os12t0510900-01 | Rice | cytosol | 46.94 | 91.09 |
| GSMUA_Achr1P22510_001 | Banana | cytosol | 80.1 | 83.96 |
| TraesCS5A01G103100.2 | Wheat | cytosol | 99.49 | 82.98 |
| GSMUA_Achr2P06650_001 | Banana | cytosol | 80.1 | 80.51 |
| GSMUA_Achr8P31070_001 | Banana | cytosol | 79.08 | 80.31 |
| PGSC0003DMT400059073 | Potato | cytosol | 73.47 | 74.61 |
| Solyc11g044740.1.1 | Tomato | cytosol | 73.47 | 74.61 |
| KRH35659 | Soybean | cytosol | 68.37 | 74.44 |
| VIT_03s0091g01010.t01 | Wine grape | cytosol | 72.96 | 73.71 |
| TraesCS4B01G212600.1 | Wheat | cytosol | 49.49 | 47.55 |
| TraesCS6B01G265100.1 | Wheat | cytosol | 47.96 | 45.41 |
| TraesCS2B01G388000.1 | Wheat | cytosol | 46.94 | 44.66 |
| TraesCS1B01G190800.1 | Wheat | cytosol | 43.88 | 41.35 |
| TraesCS7B01G098800.3 | Wheat | cytosol | 54.59 | 8.53 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G107400.1 | EnsemblPlantsGene:TraesCS5B01G107400 | Gene3D:2.10.110.10 | InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24206 |
| PANTHER:PTHR24206:SF35 | PFAM:PF00412 | PFscan:PS50023 | ScanProsite:PS00478 | SMART:SM00132 | SUPFAM:SSF57716 |
| TIGR:cd09440 | TIGR:cd09441 | MapMan:15.5.41 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:146267599..146269070
Molecular Weight (calculated)
22043.9 Da
IEP (calculated)
8.372
GRAVY (calculated)
-0.682
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSFQGTTT KCNACDKTVY LVDKLTADNR VYHKACFRCH HCKGTLKLAN YNSFEGVLYC RPHFDQLFKR TGSLDKSFEG TPKVVKPERN VGNENATKVS
101: SAFAGTREKC FGCTKTVYPI ERVTVNNTMY HKSCFKCCHG GCTISPSNYI AHEGKLFCKH HHTQLIKEKG NFSQLENDHD KTSQSAGSVD DEDSEY
101: SAFAGTREKC FGCTKTVYPI ERVTVNNTMY HKSCFKCCHG GCTISPSNYI AHEGKLFCKH HHTQLIKEKG NFSQLENDHD KTSQSAGSVD DEDSEY
001: MAFAGTTQKC MACDKTVYLV DKLTADNRVY HKACFRCHHC KGTLKLSNYN SFEGVLYCRP HFDQNFKRTG SLEKSFEGTP KIGKPDRPLE GERPAGTKVS
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
101: NMFGGTREKC VGCDKTVYPI EKVSVNGTLY HKSCFKCTHG GCTISPSNYI AHEGKLYCKH HHIQLIKEKG NLSQLEGGGE NAAKDKVVAA
Arabidopsis Description
WLIM1WLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4R1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.